Prunus avium (sweet cherry): 110769177
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Entry
110769177 CDS
T05161
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110769177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110769177
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110769177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
110769177
NCBI-ProteinID:
XP_021828799
UniProt:
A0A6P5TP84
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MSEEAMKVDQPQPPRTEALQTLTEGPLSSSISKLSGSSRGIPSNLDFYFYRNFDEFKAPI
EQITEQSQSMLGSVGSSAPIWGKKMAVPQDLDHEYDWLVNVNDEVLERFDSSVEEFKRIR
NEAEEPKRPMIADFDSENGFQLVCGKKKKGPSGSASANGDSTQVSSVKVATKDKKTVGTK
PKVPFHIPTIRRPQEEFNIYFNNSNQPFEHAWLQRSEDDQRFLHPLEKLSVLDFVDTDVG
DVEPVKPPSLESTPFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQIST
RTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIMWLQRDFGIYICNLFDTGQA
SRVLKMERNSLEYLLHQLCGVTANKEYQNADWRLRPLPEEMVRYAREDTHYLLHMYDLMR
TMLCLMPKESENLDTPLVEVYKRSYDICMHLYEKELWTENSYLHIYGLQGAGFNAQQLAI
VSGLCEWRDVVARFEDESTGYILPNKTLLEIAKQMPVTTSKLKRLVKSKHPYIEHNLASV
VSIIGLSMQNAAFLEPAVEHLKLGRAGMNKEDKLEQIRSSMNFPFPSFTGSSEQSKPIIK
APATSSEIPHSEGPLSDLSSSFQNCFQSRKRNRKPREVKKSLESCGLQVKPFDYEAAKRG
VIFGAKSVKDAGAGERCKEPEFRREEKIFRRYSLK
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaagccatgaaggtggaccaacctcagccaccgaggaccgaagccctccaa
accctaaccgaaggtcctctctcctcgtcgatatccaagctctcaggctcatcgcgaggc
ataccttccaacctagacttctatttctaccgcaacttcgacgaattcaaggcaccgatc
gaacaaatcacagaacagtcgcagtcaatgctcggctccgttggctcttcggcgcctatt
tggggcaaaaagatggctgtaccccaagacttggaccacgagtacgattggctggttaac
gtcaacgacgaggtgctcgagaggtttgactcgtcggtggaggagttcaagagaatcagg
aatgaggcagaggagcccaagcggccgatgattgcggattttgactcggaaaatgggttt
caattggtctgtgggaagaagaagaaggggcccagtggctcggcgagtgctaatggtgat
tcgactcaggtctcgagcgtgaaggtggctaccaaggacaagaagactgtggggacgaag
cccaaggtaccgtttcatataccgacaattcggaggcctcaggaggagttcaacatttat
tttaataattcaaaccagccgtttgagcatgcttggttgcagagaagtgaggacgatcag
cgttttcttcatccccttgagaagctttctgttctggattttgttgacactgacgttggg
gatgttgagcctgtaaaaccaccctcattagagtctacgccattcaagctcgtggaggag
gtcaaagatctgaaagagctggcagctaagctgcgtggtgttaatgaatttgcggttgat
ttggaacacaatcaatatcgatcctttcaaggattgacttgcttgatgcaaatttctact
agaactgaagattttatagtagatactttgaagcttagaattcatgttggtccatatctc
agggaagttttcaaggaccctgccaagagaaaggtgatgcatggagcagatcgagatatc
atgtggctccaacgtgattttggcatttatatctgcaatttgtttgatactggccaggcc
tcaagggtattgaaaatggagagaaatagtttggaatatcttttacatcagttatgtggt
gttactgctaacaaagaataccagaatgcagattggagattacgccctcttcctgaggag
atggtcagatatgccagagaagatacacactatctgttgcacatgtatgatttaatgaga
acaatgttatgtttgatgccaaaggaatcagaaaacttggacactcctttagtagaggtt
tacaagcggagttatgatatatgcatgcatctgtatgagaaagagctttggacagaaaat
tcctatctccatatatatgggttgcaaggtgctggtttcaatgctcagcagcttgcaatt
gtttccggtctttgtgagtggcgggatgttgttgctcgttttgaggatgaaagtactggc
tatatattaccaaacaaaactcttcttgaaattgctaaacagatgcctgtcactactagc
aagttaaagcgattggtgaaatcaaagcacccgtacattgagcacaatcttgcttctgtg
gttagtatcattgggctttctatgcaaaatgctgcttttttagagcctgcggtcgaacat
ctgaaattgggacgtgcgggtatgaacaaggaagacaagttggagcaaattaggtcgtca
atgaactttcctttcccctcatttacgggaagcagtgagcaatcaaagccaatcatcaaa
gcaccagctacaagttccgaaattccccactctgaagggcctctctctgatttgtcctcg
agcttccaaaattgttttcagtcacgtaagcgaaacaggaaacccagagaagtgaagaaa
tccctagaatcctgtggtttgcaggtgaagccttttgactatgaagcagcaaagagaggg
gtcatttttggagctaagtcagttaaagatgccggagctggggaaaggtgtaaggagcct
gaattcaggagggaagaaaaaatctttaggcggtatagtctcaaatga
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