Prunus avium (sweet cherry): 110769336
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Entry
110769336 CDS
T05161
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
pavi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110769336
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110769336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110769336
04121 Ubiquitin system [BR:
pavi04121
]
110769336
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110769336
Enzymes [BR:
pavi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110769336
Spliceosome [BR:
pavi03041
]
Complex B
Other components
Prp19 complex
110769336
Complex C
Prp19-CDC5 complex
110769336
Ubiquitin system [BR:
pavi04121
]
Ubiquitin ligases (E3)
U-box type E3
110769336
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
110769336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_SPT8
eIF2A
Beta-prop_EIPR1
WD40_like
Beta-prop_HPS5
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_DCAF12
U-box
zf-Nse
PEP5_VPS11_N
KNTC1_N
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
110769336
NCBI-ProteinID:
XP_021828978
UniProt:
A0A6P5TMX9
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MNCSISGEVPEEPVVSKKSGLLFEKRLIERHISEYGKCPITGEPLTADDIVPVRTGKIVR
PRPAQAASIPGMLGMFQLEWDSLMLANFAMEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLALAERQIPMSAPSTVAANASVHSNGKPAADDQLGPGVRNVRPGISPNILDD
MTECNSVLSQQRKRRQISPTLAPVDALERYTQISSHPLHKTSKPGILSIDIHSNKNIIAT
GGVDANAVIFDQPSGQIISTLSGHSKKVNSVKIVPRDDLLITGSADKTVRIWQGSDDGNY
NCNHILKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLSSGLCLTQVEDPSASEGYTSL
AFHPDGLILGTGTTGGLVKIWDVKSQTNVAKFEGHVGAVTSISFSENGYFLATAASDGIK
LWDLRKLKNFRTFTPYGPDTPTNCVEFDYSGSYLAAAGSDIRVIQATSVKLDWNTIKTFP
DMSGTGKATSVKFGPDAKYIAVGSMDRNLRIFGLPGDDSAMEP
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatctccggcgaggtgccggaagagcctgtggtctccaagaagtctggg
ttgctcttcgaaaagcgtttaattgagagacatatctcggaatatggaaaatgcccgata
actggagaaccacttaccgctgatgatattgttccagttcgaacgggcaagattgtaagg
cccagacctgcacaagctgctagtatccctggcatgctcggaatgttccagcttgaatgg
gatagtttgatgctagctaattttgcgatggagcaacaattgcatacagcaaggcaagag
ttgagtcatgctttgtatcagcatgatgctgcgtgccgtgttattgcaagactcaaaaaa
gaaagggatgaagcaagatcattacttgctctggctgagagacaaattcccatgtcagca
ccatcaacagttgcagcaaatgcctctgtccatagcaatgggaaaccagctgctgatgac
cagctgggacctggcgtgaggaatgtacgccctggaatatctcccaatatcctagatgat
atgactgaatgtaattcggttctttcacagcagaggaagaggcggcagatatccccaacg
ttggctcctgttgatgctttggagaggtatactcagatatctagtcatccccttcataaa
acaagcaaaccaggaattttatcgattgatattcattctaacaagaacataattgcaact
ggaggggttgatgcaaatgcagtaatctttgatcaaccatcaggacaaatcatatccact
cttagtggtcattcaaagaaggttaacagtgtcaaaattgtacctcgggacgatctgtta
ataactgggtcagcagacaagacagttcgcatatggcaagggtctgatgatgggaactat
aactgtaaccacattttgaaggaccatactgcagaggtgcaagctgttactgtacatgcc
acgaataactactttgtgactgcttctcttgatagtacatggtgcttttacgatctttcc
tcggggttatgtctaacacaggttgaagacccttccgcatctgagggctatacatctttg
gcgtttcatcctgatggtcttatccttggaacaggcaccacagggggtcttgtgaaaatt
tgggatgttaaaagccagacaaatgttgccaagtttgagggacatgttggtgcagtaact
tccatctccttctcagagaatggttactttcttgcgactgcagccagtgatggcattaag
ttgtgggatctacgcaaattgaaaaacttcaggacattcactccatatggtcctgacaca
ccaacaaactgtgttgaattcgactacagtggaagttaccttgctgctgctggctccgat
ataagagtcatccaagctactagcgtcaaattagattggaacactataaagacttttcct
gatatgtctggcacaggtaaagcaacaagtgtcaaatttggtccagatgcaaaatatatt
gcagtaggatcgatggaccgtaaccttcgcatttttggcctgcctggcgatgatagtgca
atggagccctga
DBGET
integrated database retrieval system
