Prunus avium (sweet cherry): 110770242
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Entry
110770242 CDS
T05161
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110770242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110770242
Spliceosome [BR:
pavi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110770242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_WDR19_1st
PRP4
NBCH_WD40
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_SCAP
WD_LRWD1
WD40_like
Tricorn_2nd
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
WDR54
Motif
Other DBs
NCBI-GeneID:
110770242
NCBI-ProteinID:
XP_021830030
UniProt:
A0A6P5TSF4
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MTMEEDKPSTTVAEPSVAAVPIAPVRPPVPRPPAPQNGEARASTSDSDSDSAGPPRATGV
SGAEYEISEESRVVRERQEKAIQELLMKRRASALAVPTNDMAVRARLRRLGEPITLFGER
EMERRDRLRMIMARLDSQGELEKLLKVHEEEEAAASAALEDGDDQMVQYPFYTEGSKALL
NARIDIAKYSIKRAASRLERARRKKDDPDEDMDAELDWALRQASSLELDCSEIGDDRPLS
GCSFSHDGKLLATCAISGVAKLWSMPEAKKFATLKGHTERLTDVQFSPVHNLVATASADR
TAKLWNTEGSQLVTFKGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETSEELLLQEGH
SRSVYGIAFHPDGSLVASSGLDALARVWDLRTGRSILSLEGHVKKVLALSFSANGYYLAS
GGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGYFLVTASYDLTTKIWSARDFKP
VRTLSGHEAKVTSLDIAGDGHQIATVSHDRTIKLWSSSTNEKDQAMDVD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgactatggaggaggataaaccttcaacaactgtagcagagccatctgttgcagcagtc
ccaattgctccagttcgacctcccgtaccgaggccgccggcgccacaaaatggtgaagcg
agggcgagtacgagcgattccgattccgattcggcgggtcctccccgagccaccggcgtt
tcgggtgccgaatacgaaatatcggaagagagcagagtggtgagagagcgacaggagaaa
gcaattcaagaactgttgatgaagcgccgtgcttctgctcttgctgttcccactaacgac
atggctgtgagggctcgtcttcggcggctcggcgaacccattactctttttggagaaaga
gagatggagaggcgagacaggttgaggatgatcatggcaaggcttgattcgcaaggcgag
ttggagaagttgttgaaagttcatgaggaggaggaggctgccgcttctgctgcattggaa
gatggtgatgatcaaatggttcagtaccctttttacactgaaggatccaaagctttgttg
aatgcgagaattgacattgcaaagtactccattaagagggcagcttcgcggcttgaacgg
gctcgaaggaagaaggatgacccagatgaggatatggatgcagagttggactgggctttg
aggcaggcatcaagtttggaactagattgtagtgagattggggatgataggccactttct
ggttgttctttctcacatgatggaaaactgcttgccacttgtgctataagtggagttgcc
aagttgtggagcatgcctgaagcaaagaagtttgccaccttgaagggacacacagagcgc
ctgactgatgttcagttttctcctgtgcataacctcgtagcaactgcttctgctgaccgt
actgcaaagttgtggaacactgaaggatctcagctggtgacatttaagggtcatttggac
cgtcttgcacgtattgccttccatccatcaggaaaatatttaggtacaactagttttgac
aagacatggaggctatgggatgtagaaactagtgaagagttgcttcttcaagaaggtcac
agtaggagtgtctacgggatagcattccaccctgatggatcattggtggcatcttctgga
ctggatgcacttgctcgtgtttgggacctccgtacgggtagaagtattctttccttggaa
ggccatgtcaagaaagttctagcactcagtttctcagcaaatggctattatttagccagt
gggggtgaagacaacacttgcaggatatgggatttaagaaaaaagaaatccatatacatc
attccagcacattccaatctcatatcacaggtcaaatttgagcctcaagagggatatttc
ttagtaactgcttcgtatgatttgacaacaaagatatggtcagcccgagattttaagcct
gtcaggacgctctctggacatgaagcaaaagttacttctttggatattgcaggagatggg
catcaaattgctactgtatcacatgaccgaaccatcaaactgtggtccagcagtaccaat
gagaaggatcaggcaatggatgtagattag
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integrated database retrieval system
