Prunus avium (sweet cherry): 110770359
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Entry
110770359 CDS
T05161
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110770359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110770359
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110770359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_EML
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
ASA1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
CFAP251_N
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_DCAF4
eIF2A
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
NBCH_WD40
WD40_RFWD3
PAC11
Beta-prop_DCAF12
Beta-prop_HPS5
Tricorn_2nd
WD40_like
WD_LRWD1
PROPPIN
WDR54
Motif
Other DBs
NCBI-GeneID:
110770359
NCBI-ProteinID:
XP_021830174
UniProt:
A0A6P5TTH3
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MMYPDPQQQHHQQQHQHQQHQQQGGEFHRGPPPPAPMMRQPSASSTNMAPEYHHPSGPAP
PLPPYDAHPDGFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDARDRTVLQPTPAAAID
MLPTVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF
NFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSF
CKTDLKFCSCSDDTTVKVWDFARCQEERTLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKL
WDAKSGRELCSFHGHKNMVLSVKWNQNGNWVLTASKDQIIKVYDIRAMKELESFRGHRKD
VTALAWHPFHEEYFVSGSFDGSIYHWLVGHDTPQVEIPNAHDNSVWDLAWHPIGYLLCSG
SNDHTTKFWCRNRPGDTGRDKFNIGQNQGFGEQNPAFGGRMTGNFPVAEGPPTPGPFPPG
LTRNEGTIPGVGVAMPLSLDASTQGDQQQTHALSMPLGAPPLPPGPHPSLLAANQQQQYQ
QNPQQIPQQQHQQHQAHPQQMPPMPMPPPNMPHLQPPSHLPLLPHPHLHRPPPQMPPLGM
PSSVPGSLPMPSSVPTSHSMQMGMQGTMNQMVHPLPQGHYMGMNPMHSGSLPTSGASAPV
GGFANGMPNMQGPSNASGGQMYPQGGTFNRGQPGQIPMHPGYNPYQTRGQSGMPQPPPGP
PPHGQAPQ
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgatgtaccctgatcctcaacagcaacaccaccaacagcagcatcagcatcagcagcat
cagcagcaaggtggagaatttcacaggggccccccgcctccggcgccaatgatgcgtcag
ccgtcggcctcttcgactaatatggccccagagtatcaccacccatctggccccgctcct
cctcttcctccttacgatgctcatcctgacggttttgctgcaaaaaggatgagaaagctt
acccagaggagagcagttgattacactagcactgtggtgcgatatatgcagattcgaatg
tggcagcgtgatgcaagggataggacagtattgcaacctacaccagcagcagcaattgat
atgttgccgacagttgcctattcagataatccatccactagttttgctgcaaagtttgta
catacgtccttaaacaaaaatcgttgttcgattaatcgggtcttgtggactcctacaggg
agacgtcttattaccggctctcaaagtggggaattcactctttggaatggacaatcattt
aactttgaaatgattcttcaggcgcatgatcaagcaatcaggtctatggtatggagtcat
aatgacaattggatggtctctggcgatgatgggggctcaataaagtattggcagaacaac
atgaataatgtgaaggccaataaatctgctcataaagaatctgttcgtgatttaagcttc
tgtaagactgacttgaagttctgttcctgttctgatgatactactgttaaagtttgggat
tttgcacgttgtcaagaagagcgcacattgactggccatggttgggatgtgaagagtgtt
gactggcaccctacaaaatctctactagtttcaggtgggaaagacaatcttgtcaaactt
tgggatgctaagtcagggcgagaactctgttcatttcatggccacaaaaatatggtgctc
tctgttaaatggaaccaaaatggtaactgggtgctaacggcttcaaaggatcaaatcatt
aaggtttatgacataagggctatgaaggaacttgaatcttttcgtggccatcgaaaggac
gtgactgctctggcttggcatccatttcatgaagaatattttgtcagtgggagttttgat
ggatccatttaccattggcttgttgggcatgatactccccaggttgaaattcctaatgca
catgataacagtgtgtgggatcttgcatggcatcctattggttatcttctctgcagtggt
agcaacgatcacactacgaagttttggtgcagaaataggccgggagacaccggtcgtgat
aaatttaacattggtcagaatcaaggttttggtgagcagaaccctgcttttggtggtcgc
atgactggtaactttccagtagctgaaggaccaccaactccaggaccatttcctcctgga
ttgactcgaaatgaaggaacaattccaggtgttggagttgctatgccgttatctcttgat
gcatcaactcagggagaccaacagcaaactcatgcactttcgatgcctttaggggctcct
cctctccctcctggtccacacccctctcttcttgctgctaatcagcagcaacaatatcag
caaaatcctcaacagatcccacaacagcaacatcaacaacaccaagctcacccacagcaa
atgccccctatgcctatgccgcctccaaatatgccacatctacagcctccatcccattta
ccgttgctgccccatcctcatttacatcgcccgccaccccaaatgcccccactcgggatg
ccatcatcagtgcctggatccttgcctatgccttcatcagttcctacctcacattcaatg
caaatgggaatgcaaggtacaatgaaccagatggttcatccattgccacaaggtcattac
atgggcatgaacccaatgcactcaggatccctacctacaagtggagcatctgcacctgtt
ggaggttttgcaaatggtatgccaaacatgcagggcccatctaatgcaagtggaggccaa
atgtatcctcagggtggcacctttaatcggggtcaacctgggcaaattccaatgcatccg
gggtataatccctaccagactaggggtcagtctggtatgcctcaacctccaccaggtccg
ccaccgcacgggcaagcacctcagtag
DBGET
integrated database retrieval system
