Prunus avium (sweet cherry): 110770483
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Entry
110770483 CDS
T05161
Name
(RefSeq) uncharacterized protein LOC110770483
KO
K06100
symplekin
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110770483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110770483
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110770483
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110770483
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110770483
U7-dependent histone pre-mRNA processing factors
110770483
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
HEAT_2
PRO8NT
Motif
Other DBs
NCBI-GeneID:
110770483
NCBI-ProteinID:
XP_021830315
UniProt:
A0A6P5TTA1
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MVGMMMVANSNERLASLMDSAILASDIPSKLDRLRQSKQDLAVQQDPALLSGLLPRLFEL
QSDRFSPVRKFATEMLGEIGLMHVELLPEIVPSLINVVSDGTPAVARQAITSGIHLFRCV
LEKVSIQGLHSSELDSLLESSWAWVLKLKEEIYSIAFRPGSGGIRLLALKFVESVILLYT
SDPNGSPEPPAHEGDLVEFNISWLRGGHPLLNIGDLTIEASKSLGLLLDQLRFPTVKSLG
NLVIIVLINSLSAIAKKRPAFYGRILPVLLGFDPSSAVINGVHVSGAHHALKNAFLTCLK
CTHKGAAPWRDRLVGALRKLKAGGLVEQAIPQASKINGSVEDGLDDSPITKEEKPTIKTS
NAVQSSSGRKRLGALDSSDLAEDEDVSGKRAKSISSVSEESVKECDMNISVSQDDISSSG
TTTSRGDSDSGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMYNFPPN
LPGAEGDESLMNMGIVGGDSRVKYPPSFIADVLSLTSTFPPIAALLDTHQSVSNDIVKPE
VEEEQVASVVDSAVASTGMDYEAENSTLPTGLPSSSEAFSSEMEKGCQPVPSDVHDMEYL
ESEIPGLDSSACNSGLSEPFVASSSALMDVEDASQEQVTSSCQRTQLNVLPSLSADKSEE
LSPRAAVADINSLVSSTATSVGLPSHLVLPKMSAPVVILADEEKDQLQKLAFTRIIEAYK
QIAITGGSQLRCSLLINLGVEFPLELDPWKLLQKHILADYTNNEGHELTLRVLYRLFGEA
EEEHDFFSSTTATSVYETFLLNAAETLRDSFPASDKSLSRLLGEVPYLPNSVLKLLECMC
SPGSSDTTEKETQGGDRVTQGLSTVWSLILLRPPFRDPCLKIALQSAVYHLEEVRMKAIR
LVANKLYPLSSIAQRIEDFAIEMLLSVKSGDATERTDAEGSKTESQKDSDLEKHSNEPPS
VSGNSKDISSDTHQSCNSQSVSSLSIAEAQRCLSLYFALCTKKHSLFHHIFSVYGSASKA
VKQAVHRHIPILVRTMGSSPDLLEIISDPPSGSENLLMQVLHTLTDGIVPSRELVFTVRK
LYDSKLKDVEILIPILPFLPKDEVMLIFPQLVNLQLDKFQAALARTLQGSSNSGPLLAPA
EILIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRT
VLQAIGAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCAFLTKPQSFGVLLQLPPAQL
ENALKRTAALKAPLVAHASQPDVRSSLPRSILVVLGIVSDSQAQTSQSQAGDASNSDKEA
VTEKSKESSSAC
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcatgatgatggtcgcgaactccaacgaaagactcgcgagtctcatggactca
gccatcttggcctctgacataccgtcgaagctcgaccggctacgccaatcaaagcaagat
ttggcggtccaacaagaccctgcgttgctctctgggctccttcctcgcctcttcgagctt
cagtccgaccggttcagtccggttcgaaaatttgccactgaaatgcttggcgaaattgga
ctgatgcacgtagaattattaccagaaattgtaccttcgttaattaatgttgtgagtgat
ggaacaccggctgttgctcgacaagccatcactagtgggattcatttatttcgttgcgtt
ctcgaaaaggtttcaattcagggtttacattctagtgaattggacagtttgcttgagtca
tcttgggcatgggtgttaaagttgaaggaggaaatatactcgatagcttttcggccagga
agcggggggataaggttgctagcactgaaatttgttgaatcagtcattcttctttacact
tctgatcctaatggctccccagagccccctgctcatgaaggggacttggtggaatttaat
atatcttggcttcgtggtggccatcccctactcaatattggagatttgacaattgaggct
agtaaaagtttgggtttattgcttgatcaacttaggttcccaactgtgaaatcgcttggt
aacttagtgatcattgtgcttattaatagtctttcagcaattgcgaagaagaggcctgca
ttctatggtcgcattttgcctgtattacttggatttgatccctcaagcgctgtcattaat
ggggtacatgtctctggggcacaccatgccttaaaaaatgccttcctcacctgcttaaaa
tgtacacacaagggagctgcaccgtggcgggatcgtttagttggggccttgagaaagttg
aaagctggagggttggtagagcaagccattcctcaagcttccaagattaatggaagtgtg
gaggatggactagatgattctccaattactaaggaggagaaacccacaattaaaacatct
aatgctgtgcaaagtagttctgggaggaaacggttaggagcactggatagtagtgacctt
gcagaggacgaagatgtttctggaaagcgtgccaaatcgatatctagtgtctctgaggaa
tcagtgaaagagtgcgatatgaatatttctgtgtctcaagatgacatttcttcaagtgga
actaccacttctagaggcgatagtgatagtggacctgtgcagcaacttgttgctatgttt
ggtgcattggtagctcaaggtgaaaaagcggttggttctttagaaattctcatctcaagt
atctctgctgacttgctagcagaggttgtgatggctaatatgtacaactttcctcccaat
cttcctggtgctgaaggagatgaatctctgatgaacatgggtatagttggcggtgattct
cgagtgaaatatccaccatcatttattgctgatgttctctcacttacaagtactttccct
ccgatagctgcactcctagatactcatcagtcagtgtccaatgatatagtgaaacccgaa
gtggaggaagaacaggtagcatctgtagttgacagtgctgttgcaagtactggcatggat
tatgaagctgaaaattctacgttgccgactggtttaccgtcttcatctgaagcattttca
tctgaaatggagaagggttgtcaacctgtgccatctgatgttcatgatatggaatatctt
gagagtgaaatacctgggctggattcttctgcttgtaatagtggattatcagaacccttc
gttgcatcctcatcagctttaatggatgtagaagatgcaagtcaagagcaagttaccagt
tcgtgtcaaaggacacaacttaatgtacttccatcactgtctgcggataagtctgaggag
cttagcccaagagctgccgttgcagatatcaatagcctggtttcttcaacagcaacttca
gttgggttgccctctcatcttgtcttgcccaagatgtcggcaccggtagtcatccttgct
gatgaagagaaggatcagttgcagaaattggcttttacgcgcatcatcgaggcatataag
caaatagctattactggaggttcacaattacgatgctctctccttataaatttaggagtt
gagttccctttggagttagacccatggaaactgctgcagaagcatatcttggcagattat
acgaataatgagggacatgagttgacattgcgtgtcctatacaggttattcggagaggca
gaagaggaacacgatttcttttcttcaacaactgctacttctgtatatgaaacgtttctt
ttgaatgcggcagaaacacttagagattcttttccagcgtctgacaaatcattaagcaga
ttacttggcgaggttccttatttaccaaattcagttctgaaattattggagtgcatgtgc
tcacctggaagcagcgacacaactgagaaggaaacacaaggtggggatcgagtgactcaa
ggtctcagcactgtgtggagcctgattttgctgaggcctcctttccgcgatccctgctta
aaaattgctttacagagtgcagtttatcatctggaggaagtgcgtatgaaggctatacgt
ctggttgcaaacaagctttatcctttgtcatccattgctcaacgaatagaagatttcgca
attgaaatgttgctttctgtaaaaagtggtgatgcaactgaaagaacagatgctgaagga
tcaaaaacagaatcacagaaggattctgatttggaaaagcattcaaatgaacctccatct
gtgagtggtaacagtaaagatatctcctctgatactcatcaatcatgcaattctcaaagt
gtgtcatccctttcaattgctgaggcccagcggtgtttgtcattatattttgctctatgt
acaaagaagcattccctttttcaccatatattttcagtttatggaagtgcatcaaaggct
gttaagcaggcagttcatcgtcacattccaatacttgtacgtactatgggatcgtcacca
gatcttcttgaaattatttctgatcctccaagtggaagcgagaacctcctgatgcaggtt
ttgcatacactgacagatgggatagttccttcacgagaactggtttttactgttaggaag
ttatatgattcaaaactgaaggatgtagagattcttattccaatattgccctttttaccg
aaagacgaggttatgcttatatttccccaacttgtgaatcttcaactggataagttccaa
gcagcactagctcgcacactacagggatcatccaattctggtcctcttcttgctccagct
gaaatcttgattgctatccatggaattgatcccgacagagatggaattccactaaagaag
gtcactgatgcatgcaacgcctgctttgagcagaggcagatattcacccaacaagttctt
gccaaagttttgaatcaattggttgagcagattccccttcctttactgttcatgcgtaca
gtattacaagccataggtgcttttcctgcactggtggattttataatggagatcctctct
cgacttgtgagcaagcagatatggaaatacccaaagttgtgggtgggattcttgaagtgc
gcgttcttgacaaagcctcagtcatttggcgtcctgcttcagctacctccagcacaacta
gaaaatgcactgaagagaactgcagctctgaaagcaccgttggttgctcacgctagccaa
ccggacgtccgatcttcacttccaaggtccatattggtagttctaggaattgtttcagat
tctcaggcacaaaccagtcagtctcaggcgggagatgcaagcaactcggataaggaggca
gtcacagagaaatcgaaggagtcatccagtgcttgttga
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