Prunus avium (sweet cherry): 110770540
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Entry
110770540 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51-like isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110770540
03009 Ribosome biogenesis [BR:
pavi03009
]
110770540
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110770540
Spliceosome [BR:
pavi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110770540
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
90S particles
Helicases
110770540
Pre-60S particles
110770540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110770540
NCBI-ProteinID:
XP_021830385
UniProt:
A0A6P5TTG8
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MTDPIRHTSTDDETKNKKRKRKRGKKPSEESEPRNPYQAQQNEEEEKGEGDDNNKKEKKT
KILKGKEEANEENKEEEAEGVEEENKRKKNVKRGGGSGIMSTDSFDSLNLSANTFRAIQE
LNFQYLTEIQARAIPSLLIGKDVLGAARTGSGKTLAFLIPAVELLYHIKFTPRNGTGVVV
ICPTRELAIQTYAVAKNLLKYHSHTVELVIGGAARRGEAERLVKGVNLLVATPGRLLDHL
QNTKGFIYKNLKCLIIDEADRIMEANFEEEMKQIIKLLPKKRQTALFSATQTTKVQDLVR
LSLKEYHLIDVDGGRTKVTNEGLKQGYFIVPSEERFILLYSFLVKTRSKKVMVFFSSCNS
VKFHSDLLRYINVDCFDIHGKQKQQKRTKTFFDFCKAEKGILLCTDVAARGLDIPAVDVI
VQFDPPDDPKEYIHRVGRTARGEGGKGKAFLFLIPEEMQFIRYLTAEKVPVEEQQINKNK
LKNVQSQLEKMVEGNYYLRQAAKEAYKSYLLAYNSHSMKDIFNVHRLDLQAVAASFCFCS
PPKVNLNLNSSASKFRKKMRIGGSRNGFSESNPYGMQKGRDEIRQFVRH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacagacccaatacgtcacacatctacggacgacgagacgaagaacaagaagcgcaag
agaaagagagggaagaaaccatcggaagaatcagagcctcgaaacccttatcaggcccaa
caaaacgaagaagaagagaaaggagaaggtgatgataacaataagaaggagaagaagacg
aaaatattgaagggaaaggaagaggccaacgaggaaaacaaagaagaagaagcagagggg
gtggaggaggagaataagaggaagaagaatgtcaagagaggtggaggatctgggattatg
agcacagactcttttgattcattgaatttgtctgccaacactttcagggccattcaggaa
ctaaactttcagtatttgactgagattcaagcaagagcaatcccatcactattgatcgga
aaagatgtcctgggagctgctaggacaggatccgggaagactcttgcttttcttatacca
gctgtggagttgctatatcacataaagtttactcctcgtaatggaacgggtgttgttgtt
atttgtccaacacgggaacttgcaattcagacctatgccgtggcaaagaaccttctgaag
taccactcacatactgttgagttggttatcggtggtgcagctaggagaggtgaagcagaa
cgtcttgtaaaaggagtaaatctattggttgcaacccctggtcgacttcttgaccatctc
cagaataccaagggattcatatataagaacttgaagtgcctcataattgatgaagctgac
aggattatggaagcaaactttgaggaagaaatgaaacagattattaagcttctacccaag
aaaaggcaaacagctttattttcagcaacccaaactacgaaggttcaagatcttgttaga
ttgtcgttgaaagaatatcacttgattgatgtggatggtgggagaactaaggtcaccaat
gaagggctgaaacaaggctattttattgtgcccagtgaggagagatttattctcctatat
tcttttctggtgaagactcggtctaagaaagtgatggtcttcttctcttcttgtaactca
gtcaaattccactcggaccttcttagatacattaatgtggattgctttgatatccatgga
aagcaaaagcagcagaagaggaccaaaacgttttttgacttctgcaaagcagagaaagga
atcttactctgtactgatgttgctgctcgtggcctagatattcccgctgtggacgtgatt
gtgcagtttgatcctccagatgatcccaaggaatatatccatagggtcggtcgaacagct
cgaggggaaggtggaaaaggaaaggcatttcttttcctcattcccgaagagatgcagttt
attcgctatttgacggctgaaaaggtccccgttgaagagcaacaaattaataaaaataag
ctgaaaaatgtgcagtctcaattggagaagatggttgagggcaactactatctgcgccaa
gcggcaaaagaagcatataaatcttatctattagcatataattcacactctatgaaggac
atctttaacgttcaccgtctcgatctgcaggcggtcgcagcatcattttgcttttgtagt
cccccaaaggtgaatttgaacttaaacagcagtgcatcaaagttccggaagaagatgcgc
ataggaggaagtcgaaatggattcagcgagagcaatccttatggaatgcaaaaaggtaga
gatgaaattcgacaatttgtgaggcattag
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