Prunus avium (sweet cherry): 110770686
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Entry
110770686 CDS
T05161
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pavi03036
]
110770686
Chromosome and associated proteins [BR:
pavi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110770686
microRNA pathway
RISC loading complex
110770686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
DND1_DSRM
SNF2-rel_dom
DSRM_DHX29
AAA_22
Motif
Other DBs
NCBI-GeneID:
110770686
NCBI-ProteinID:
XP_021830577
UniProt:
A0A6P5TTX3
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MEHSNPEMGLTGLDHSSKKTQSPPNPNHFIPRSYQVKVFEVAKQKNTIAVLETGAGKTMI
AVMLIKHVSEDMTKSNGKRKLIIFLAPTVNLITQQFKVIKDSTTLEVGEYYGAKGVDEWS
RSCWEMEVQTHDILVMTPQILLDALRNAFLSLEMFCLLIFDECHRATGNHPYTKIMKEFY
HTSGNRPKIFGMTASPVIRKGVSSTMDCENQISALESILDSQVYAIEDRAEIEAYIPSTV
QTCRFYEKAWLLMNLGLKGEMEALWSKYASMLELQREVPSQYQYYQDIDDKIKMLRKRMS
NDYMKILYCLNDLGLICAYEAVKVCLENAFDVEEESQFYRGSSLKLKYFLDEVLHIIEGF
LRPYMQLGNNICTDFEFDYIKAHDLGYISPKLHELLQIFQSFGSGSQVPCLIFVERIITA
NVIERYVKKVPCLSHFTVSYLTGSNKSVGALTPKLQKETLESFRSGKVNLLFATDVVEEG
IHVPSCSCVIRFDLPKTVRSYVQSRGRCRTSESQFILMFERGNKKQIDQVFDIIRSEYSM
TETSRNRDPEVCILRDCNFEETKAYYVNATRASVTADSSVSLIHRYCEKLPGDKYFIPKP
TFDFEISEGLYQCKITLPPNAAFQTTVGPLSSNTHLSKQLVCLEACKKLHEVGALDDHLL
PLIEEPLENDLITKSKESSAGAGTTKRKELHGTTCIRALCGTWGEKLDGEIFEAYKFDFC
CNINETYSGFVLLIESKLDNDVQNIEVDLQLISRMVKSSVSSCGKMHLSAKEVMQAKCFQ
EFFFNGLFGRLFSGSESEGAKREFLLQTEKKSLWSSSYMYLLLPIETLDTSNTNPWRVNW
TGISSCANVVEFLKKNYSVGPEHFNGDQGNLSLSMTGSPMTEYMASDLIHFANTSIDVHN
LQDLLVLATHTGRIYSIVEVVSSESAESPFEETVDAASLEYSYAEYFKTKYGIVLVYPGQ
PLLLLKQSHNPHNLLGAEGAASKDGGSAEIKPQAHVHMPPEVLVIIDFRVDVLRSFYLLP
SLMYRLESLMLASQLREEINGKSSNINISSSLILEALTTLRCCENFSLECLEFLGDSVLK
YAVSSHLFLKYPEKHEGQLTARRTRAICNANLHKLGTERNIQGYIRDGAFEPRRWAAPGQ
HSRFPDPCKCGVDTLEVPLDRRFQTKAPVKVGKFCDRGHRWMNSKTIADCVEALIGAYYV
GEGLFAALHVMKWLGIDSELELSLTIEAITRASLRSYNPKNDQIAALESKLGYKFSVKGL
LQEAITHASQQKLGVSYCYQRLEFLGDAVLDVLITQHLYHSHTDVDPGELTDLRSAAVSN
ESFARAAVRRNLHPHLQHCSGLLLSHITGYEKLCTEALNNTSLLEEIKGPKALGDMVESI
AGAILIDSKLDLDEVWRVFKPLLSPIVTPSSLQLDPLRKLKERCDSLGYFVKETLTKEDA
MVNAELSLQLEDVILVGKGYEQKVKAAKQRAARQLLKKFEGYLQRSRDISYVQFDSKRRK
LGREHLDDLSSKDMDMDTCSKLTDDGSSKPIMHTNENMIQMLSSAESRVDFTPANGCSKE
VFGDNIENSGLPVIDSINTRKGEPRKMLYELCQKLQWRRPEFTPTENKSRTPIEFGEGSE
KREGFSSFVSDISLQIPNFGTIVCRGEPRADKNSSFDSAVVAMLYELERRGRLTIGCS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggagcactctaatcctgaaatgggcctcactggtcttgatcattcgtctaagaaaact
caatctcctccaaatcccaaccatttcatccccagaagctaccaagtgaaagtgtttgaa
gttgcaaagcaaaagaacacgattgcagtgttggaaaccggtgctgggaagaccatgata
gctgtgatgctaatcaaacacgtttctgaagatatgaccaagtccaatggcaaaagaaag
ctgataattttcttggctccaaccgttaatcttatcactcagcaattcaaggttatcaaa
gattctacaactcttgaagtgggagagtactatggagccaagggagtggatgaatggagt
aggagctgttgggaaatggaagttcaaacacatgatatactggtgatgacaccacaaatt
ctcttggatgccttgaggaatgcattcttgagcttagaaatgttttgcttattgatcttt
gatgaatgccatcgtgctactggcaatcatccctatacaaaaataatgaaggaattttat
catacatccgggaacaggccaaagatttttggaatgacagcatcccctgttataagaaaa
ggtgtctcatccaccatggactgtgagaatcaaatatcagcactcgaaagcatcttggat
tctcaggtttatgctatagaagacagggcagaaattgaagcatatattccctcaacagtc
caaacttgtagattttatgagaaagcatggttactcatgaatttgggtctgaaaggcgag
atggaagctttgtggtctaagtatgcttctatgttagagttgcaaagggaagtgccaagt
cagtaccagtactaccaggacattgatgataaaataaagatgctgagaaagcggatgtcc
aatgactacatgaagattttatattgccttaatgaccttggcctcatatgcgcatatgag
gctgttaaagtctgtctagagaatgccttcgatgtcgaagaagagtcgcaattttataga
ggaagttctttgaagttgaaatattttctcgatgaagtcttacatataattgaaggattt
cttcgaccttatatgcagctcggcaataacatttgtacagattttgagtttgactatata
aaggcacacgatttgggctacatatctcccaagctacatgaacttcttcaaattttccaa
tcatttggaagcggtagccaagttccatgcctcatctttgtagagagaattattacagct
aatgtaattgaaagatatgttaagaaagtaccatgcttatctcatttcacggtttcatat
ttgaccggaagtaacaaatcagttggtgcacttacaccaaagttgcaaaaggaaactttg
gaatcatttcgctctgggaaggtcaacctattatttgctactgatgtagttgaggaggga
attcatgtcccaagctgttcctgtgtaatccgttttgacctgcccaagacagtccgtagt
tatgtccagtctcgaggaagatgtcgaacaagcgagtctcagtttatcttaatgtttgaa
aggggcaacaagaaacaaatagatcaagtatttgacatcatccggagcgagtattcaatg
acagagacgtcaagaaacagagaccctgaagtatgcattttaagagactgtaattttgag
gaaacaaaagcatattatgtaaacgctactagagcatcagttacagcagattctagtgtc
agtctcatacatcgatactgcgaaaagctccctggcgataagtattttattccaaagcca
actttcgacttcgaaatatctgaagggttgtaccagtgtaaaataacattacctcctaat
gcggcttttcaaacaacagttggtcctctgagcagcaacactcatttatcaaagcagctt
gtatgcttggaagcttgtaaaaagctccatgaagtgggagccttggatgatcatcttctc
ccacttatcgaagagcctttagaaaatgatctcattacaaaaagcaaagaatcatctgca
ggtgcaggaacaaccaaaaggaaagaactgcatgggacgacttgcattcgtgcgttatgt
ggaacttggggagaaaaacttgatggtgaaatttttgaggcctataaatttgacttctgc
tgtaatattaatgagacatactcgggatttgttctactgattgagtcaaagcttgataat
gatgtgcaaaatattgaagtggatcttcaattgatttcaaggatggttaaatcttctgtt
tcttcatgtggaaaaatgcacctgagtgcaaaagaggtaatgcaagctaagtgctttcaa
gaatttttctttaatggtttgtttgggagattgttttcgggatctgaatcagaaggggca
aagagagagtttttacttcagacagaaaaaaaatcactatggagctcatcatatatgtat
ttgcttttaccaattgagacattggacacttctaataccaatccttggagagtgaattgg
acaggaatcagttcttgtgctaatgtggtagagtttttgaagaaaaactattccgtgggt
cctgagcattttaatggtgatcaaggaaacttatcactttctatgactggttcacccatg
acagagtacatggcttcagatctaatccactttgctaatacttcaattgatgttcataat
ctccaagatttgttagtattggctactcacacgggaagaatctattctatcgttgaagtc
gttagtagtgaatctgctgaaagtccctttgaggaaactgttgatgctgcctcattagaa
tacagctatgctgagtacttcaaaacaaagtatgggattgtccttgtgtatcctggacag
ccgctgttattgttaaagcaaagtcataatccccataacctgcttggtgctgaaggtgct
gcatcaaaagatggtggttctgctgagataaagccacaagctcatgttcacatgccacct
gaggtcttagttattattgattttagagtagatgttctcagatcattttacttgctacca
tcattaatgtaccgtttggagtcgctaatgttagctagccagcttagagaggagatcaat
ggcaaatcgagcaacattaatatatcaagttcattgattctagaagcactcacaacactt
aggtgttgtgaaaatttctcattggaatgtctggagttccttggagattcagttctcaag
tatgctgtgagctcccacctttttcttaaatatcccgagaaacatgaagggcaattaact
gctcgacgcacaagggctatttgtaatgcaaacctgcataaactaggaacagaacgcaac
atacagggatacatacgagacggtgcatttgaaccacgccgttgggctgctccagggcag
cattctagatttcctgatccatgtaagtgtggagtggatactttagaagtgcctttggac
agaagatttcaaactaaagctcctgttaaggttggaaagttctgtgatagaggtcacaga
tggatgaactcaaaaacgatagctgattgtgttgaggccctcatcggcgcctactatgtt
ggtgaaggattgtttgctgcacttcatgtgatgaagtggcttggtattgattctgaattg
gaactctcattaaccattgaagccattacgagggcatccctgcgatcctacaatccgaaa
aatgatcaaattgctgccttggagtcgaagcttggctacaaattttctgtcaagggtctg
ttacaggaggccataacacatgcctctcagcaaaaactaggtgtcagctactgttaccag
aggcttgaatttcttggcgatgcggtgttggatgttctaatcacacagcatctctatcat
agccacacagatgtcgatccaggagagctgactgacttgcgttcagctgctgttagcaat
gaaagctttgctcgagctgctgtaagaagaaaccttcacccacatcttcaacattgctct
gggttacttctgagtcatatcacagggtatgagaagttgtgtacagaagctctcaacaac
accagcttactggaagagataaaaggtccaaaggctcttggtgacatggtggagagcata
gcaggggctatactaattgatagcaagcttgatcttgatgaagtttggagggtgtttaaa
ccactattatctccgatcgtgaccccttcaagtcttcaattagaccctctacgtaaattg
aaggaacgatgtgattctcttgggtactttgtgaaagaaacacttactaaagaggatgca
atggtcaatgcagagctgagtttgcagctggaagatgttattttggttggaaaaggatac
gaacagaaagtgaaagctgcaaaacagagagcagctcgtcaattgttgaagaagtttgag
ggttacttgcagaggagcagagacatatcttatgtccagtttgattctaaaaggagaaaa
cttggacgtgagcatttagatgatttatcatccaaagacatggatatggatacctgcagc
aaattaactgatgatggttcttcaaagccaatcatgcatacaaacgaaaacatgattcaa
atgttatcatctgcagagtcaagagtagactttacaccagccaatggctgttccaaggaa
gtcttcggtgacaacattgaaaactcaggcttacctgttattgattcgatcaatacaagg
aaaggcgaacctcggaaaatgctctacgaactatgccagaaattgcagtggcgaaggcct
gaatttacaccaacagagaataaatcaagaaccccaatagaatttggtgagggctctgaa
aagagagaaggtttcagcagttttgtttcagacatcagcttgcagatacccaactttggc
actattgtatgcagaggagagcctagagctgataagaatagttcatttgactccgcagta
gttgccatgctttacgagcttgaacgacggggaagacttaccattggatgctcttaa
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integrated database retrieval system
