Prunus avium (sweet cherry): 110771806
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Entry
110771806 CDS
T05161
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110771806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110771806
03009 Ribosome biogenesis [BR:
pavi03009
]
110771806
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110771806
Spliceosome [BR:
pavi03041
]
Complex A
U2 snRNP components
U2 related factors
110771806
Complex B
110771806
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110771806
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
90S particles
Helicases
110771806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
nSTAND3
ResIII
T2SSE
AAA_30
AAA_7
PhoH
TsaE
AAA_11
SLFN-g3_helicase
ATPase
Motif
Other DBs
NCBI-GeneID:
110771806
NCBI-ProteinID:
XP_021831848
UniProt:
A0A6P5TVP1
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MSMERKRKVCLFNMVVSSSAKMSKSDGSGGATMKDNAVVSSVINPWTGMPYSQSYYEILE
KRKTLPVWQQKDEFLKALKANQFIILVGETGSGKTTQIPQFVLENVNAETPDGKRMMIAC
TQPRRVAAMSVSRRVAEEMDVKIGEEVGYTIRFEDCSSAPKTMLKYLTDGMLLREAMADP
LLERYKVIILDEAHERTLATDVLFGLLKKVLRNRPDLKLVVMSATLEAEKFQGYFSGAHC
MKVPGRLHPVEILYSEEPEKNYVEATIRTVVQIHMFEGPGDVLVFLTGEEEIEVVCCKID
KEIAKLGDQSGPVKVLPLYSTLPPAVQQKIFEPVSSGRKIVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYSPRGCVESLLVSPISKASARQRAGRAGRTRPGKCFRLYTEKSFHNHLEAQ
TCPEIMRSNLANTVLTLKKLGIDDLVHFDLMDPPAPETLMRALEVLYSLGALDDEGNLTK
LGEIMSEFPLDPQMSKMLIMSPGFHCSNEILSICSMLSVPNCFLRPREARKAADEAKAKF
GHMDGDHITLLNVYHAYKKNNEDPVWCYQNFVNEKALKAADNVRQQLARIMARFNLKLCS
TDFKSGDYYINIRKALLAGYFMQVAHLESNIGHYSTVKDNQVVHLHPSSCLDHKPEWIVY
HEYVLTSRNFIRTVTNICGDWLAEIVIALEKSGKKLCYGGLTLKDRKQTT
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggagaggaagaggaaggtgtgcttgtttaacatggtggtctcatcatcagcg
aagatgagcaaatcagacggcagtggaggagccacaatgaaggacaatgcggtggtaagc
agtgtgatcaatccgtggactggaatgccgtattcccagagctactatgagatccttgag
aagagaaagactttgccagtttggcaacagaaagatgagttcttgaaggctcttaaggcc
aaccaatttataattttggttggtgagactggtagcggtaaaaccactcaaatccctcaa
tttgttttggaaaatgttaatgcagaaactccggatggtaaaaggatgatgattgcgtgc
acgcagccacgtagagttgccgcaatgtcagtgtctcgtcgtgtagctgaagagatggat
gtgaagataggagaagaggttggctacactattcgttttgaagactgcagcagtgcccct
aaaacaatgttgaagtatttaacagatggtatgcttttaagagaggcaatggcagatccc
ctgttagaaaggtacaaggtgataatactggatgaggcacacgaaagaacattagcaaca
gatgttcttttcgggcttctcaagaaggtgttgagaaataggcctgatttgaagttggtt
gtgatgagcgctactcttgaggccgaaaaatttcagggctatttcagtggtgcgcattgt
atgaaagttcctggcaggcttcatccagtggaaattctttacagtgaggaacccgaaaag
aactatgtggaggcaacaattcgaaccgttgtgcagattcatatgtttgagggtccaggg
gatgtacttgtctttttaactggggaggaagagattgaagttgtatgctgcaaaattgac
aaagaaattgcaaaattgggggatcagtctggtcctgtcaaagtgttgcctctgtactca
actctgcctccagctgtgcagcagaaaatatttgagccagtaagttctgggaggaagatt
gtggtgtcaacaaacattgctgaaacttctttaaccatagatggaatcgtttatgttatc
gacccaggattttctaaacagaaagtttatagcccaagagggtgtgttgagtcattgttg
gtgtctccaatttccaaggccagtgcgcgtcagagggcagggcgtgctggaaggactaga
ccggggaaatgtttcagactttacactgagaaaagtttccataatcatcttgaagcacaa
acatgtccagagataatgagatcaaaccttgcaaatacagtgcttactttgaagaaacta
ggaattgatgacttggttcattttgatctcatggaccctcctgctcctgagacattgatg
cgagcactagaggttttgtattctttgggagcattggatgacgagggtaatttgaccaag
ctgggggagattatgagcgagttcccattagaccctcagatgtcaaagatgctcatcatg
agccccggatttcactgctcgaatgaaatcctgtcaatctgttcaatgctctcagtacct
aattgttttcttaggcctagagaggctcgaaaagctgcagacgaagcgaaagcaaagttt
ggtcacatggatggagatcacataacgcttctcaatgtgtaccacgcctacaagaagaac
aatgaggatcctgtgtggtgctatcagaactttgtcaatgagaaggcattgaaggctgca
gacaatgttcggcagcagctagcacgaattatggctcggttcaatctcaagttatgcagc
actgattttaagagtggggactactacatcaacataagaaaggccttgctggctggatat
ttcatgcaggtggctcacctggaaagcaacataggacactacagcacagtgaaagataac
caagttgtacacctgcatccgtccagttgcttggatcacaagccagagtggattgtttac
cacgagtatgtcctgaccagtaggaattttatccggacagtgacgaatatttgcggcgac
tggctagctgagattgtgattgcactagaaaaatcaggcaaaaaattgtgttatggaggg
cttaccttaaaagacaggaagcagactacttga
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