Prunus avium (sweet cherry): 110772407
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Entry
110772407 CDS
T05161
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110772407
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110772407
Spliceosome [BR:
pavi03041
]
Complex C
Other components
Complex C specific factors
110772407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
nSTAND3
AAA_29
AAA_23
AAA_11
Motif
Other DBs
NCBI-GeneID:
110772407
NCBI-ProteinID:
XP_021832530
UniProt:
A0A6P5U013
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MSQFWKPGAEKPRLVDDEEGGVLFFSSPSGYANIERQRQRLPVYKYRTSILYLVETHATT
IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQTVASRVAEEMGVKLGEEVG
YTIRFEDVTNTGVTMIKFLTDGVLLREMMNDPLLTKYSVIMIDEAHERSISTDILLGLLK
KIQRRRPELRLIISSATIQAKSMSAFFQTSKRRRRPEGEELGPNMEPAVLSVEGRGFNVQ
IHYVEEPVPDYLRAAVSTVLLIHEKEPMGDILVFLTGQDDIDAAVQLITEEDQNRGRKSS
GLMVLPLYSGLPRSEQELVFTPTPRGKRKVVISTNIAETSITLEGVVYVVDTGFSKQRFY
NPITDIENLVVAPISKASARQRTGRAGRVRPGKCYRLYTEEYFAKEMSAEGIPEIQRSNL
VPCVIQLKALGIDNILGFDWPASPSSEAMVRALEVLYSLGVLDDDAKLTSPTGFQIAEIP
LDPMISKMILASGQLGCSEEMITIAATLSIQSIWVSGWGSQKELDEAKLNFAAAEGDHVS
FLNVYKGFLQSGKSSQWCHKNFVNYQAMKKVLEIREQLRRTAQRIGIVLKSCERDTVVVR
KAITNGFFANACRLEASSHDGKYKTIRGSQEVYIHPSSVLFRVNPKWVLYHSLVSTDKQY
MRNVISIDPSWLTEAAPHFYQHQRLKSMVH
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttctggaaaccaggggccgagaagcctcgccttgtcgacgacgaagaggga
ggcgtccttttcttctcttccccttctgggtatgcaaatattgagaggcagaggcagagg
cttcccgtgtacaagtaccgcacatccattctctatttggtggagactcacgccactact
atcatagttggcgaaacgggcagcggaaaaaccactcaaattcctcagtacctcaaagaa
gcaggttgggctgatggtgggcgtgtaatagcatgcacccagccaagaagactggctgtc
cagacagttgcttcaagggtggctgaagagatgggggtcaagcttggagaggaagttggc
tacactatacgatttgaagatgttacaaatacaggtgtcactatgataaagtttttgact
gatggtgtgttactcagggaaatgatgaatgatcctcttttgacaaaatatagtgtcata
atgatagatgaggctcatgaaaggtctatctcaactgacattttattgggtctcctaaaa
aagatccaacgacgccgacctgagctgcgtctgatcatctcatctgccacaattcaagca
aaatcaatgtctgctttctttcagaccagcaaaaggcgtcgcagaccagaaggagaggag
cttggaccaaatatggagcctgctgtcctatcagttgagggtcgagggtttaatgtacaa
attcattatgtggaggagcctgtcccggactatcttcgggctgctgtttcaacagtatta
ttaattcatgagaaggaaccaatgggagatattctggtatttcttactggtcaagatgat
attgatgctgctgtccagctgattactgaagaagatcaaaaccgtggaagaaagtcatca
ggattgatggttttgcccctctactcaggacttccacgttctgagcaggagttggtgttc
actcctactcctagagggaagaggaaagttgtgatatcgaccaatatagcagagacatcc
ataactttggagggtgttgtctatgttgttgacactgggttctcaaagcagcgtttctac
aacccgataacagatattgaaaatctggtagtggcgccaatatccaaggcatctgctcga
caaaggaccggtagggctggaagagttcggcctgggaaatgttacaggctatataccgaa
gagtattttgcaaaggaaatgtctgctgaggggatcccagagatacaaaggtcaaatctt
gttccctgtgtgattcagttaaaagccttgggaatagataatatcttgggctttgattgg
ccagcatctccatcttctgaagcaatggttcgagcgcttgaagtgctttattcacttgga
gtcctagatgatgatgccaaacttacttcaccaactggatttcaaattgctgagattcca
ttggatccaatgatctcaaaaatgatcttagcgtcaggtcaactggggtgttcagaagag
atgattactattgctgccactctctccattcaatctatctgggtttctggttggggatca
cagaaggaactggatgaagccaagttgaattttgctgctgctgagggtgaccacgtgagt
ttcttaaatgtctacaaaggatttcttcagtctggtaaatcttcgcagtggtgtcataag
aactttgtaaactaccaagccatgaaaaaggttctggaaattagagaacaactcagaaga
acggctcagagaataggcattgtcttgaaatcttgtgaaagagacacggtggtagtgagg
aaggcaattactaatgggttttttgctaatgcatgtcgtttagaagcatcaagtcacgat
gggaagtacaagactattagaggttctcaagaagtttatattcacccatcatctgtgtta
ttcagagttaatcccaagtgggtattataccattctcttgtctcaactgataagcaatac
atgcggaatgtgatttccatagatccttcttggctcacagaggcagctccacatttttac
caacaccagcgactcaagtcaatggttcactag
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