Prunus avium (sweet cherry): 110773186
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Entry
110773186 CDS
T05161
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110773186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110773186
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110773186
Spliceosome [BR:
pavi03041
]
Complex C
Other components
Step II factors
110773186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_19
AAA_22
zf-RING_UBOX
Rcat_RNF216
ResIII
IBR_1
zf-C3HC4
WHD_HA2
IBR_2
AAA_30
zf-RING_2
ABC_tran
RsgA_GTPase
NAT10_TcmA_helicase
nSTAND_NTPase5
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
110773186
NCBI-ProteinID:
XP_021833382
UniProt:
A0A6P5U219
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MRSSCGPYPRATFRQPQQPEIPHRYRPRQPNYPPDYCCRRPPPRPPSFIVELLSDQRNHR
RADIDAVIAKCKFKPERVEFSPSNVIVVSLFYTQWVHALEAIVCLWESRLDRVHNLSPKL
NRFVSVPSDLEELQDRLRGLFTERIKKLIDGEAVKKWEAKRALLSKEFERVSKLLLRPNS
VWTLDDLAQNKRRSKCEMELVESKIREFKSAMNCLLAYLDGNGLEECGEEGVQVFKFSSE
VYNWDRIQSIMARECQRLEEGLPIYAYRQQILQQILTQQVLVLIGETGSGKSTQLVQFLA
DSGIAAGQSIVCTQPRKIAATSLAERVTQESSGCYREKSIKFNPTFLSGQELNSKVIFMT
DHCLLQHYMNDMNMSGISCIIIDEAHERSLNTDLLLALIKGLLGRRPSLRLVIMSATADA
EVLSNYYYGCGIFYVVGRSFPVDVRYIPSFSEGTSSDATSYVSDVLRVATDVHKKEKEGT
ILAFLTSQMEVEWACQKFIAPGAIALPLHGKQTFEDQYNVFQNYPGRRKIIFATNLAETS
LTIPGVKYVIDSGMAKESKFEPGSGMNVLRVCRISRSSANQRSGRAGRTEPGICYRLYSK
NDFEAMPPCQEPEIRRVHLGVAVLKILALGIKNLKDFEFIDAPCSEAIDMAMRNLIQLGA
VKQTDDVFELTKDGRYLVKLGVEPRLGKLILGCYNHSLRREGLVLAAVMANSSSIFCRVG
NDEEKLRSDCLKVQFCHRDGDLFTLLSVYKTWDNLAQEKKNTWCWENSINAKTMRRCQEM
VKDLESCLKHELNMIIPSTWCWNPHESNDCDKYLKKVILSSLVENVAMFSGHDQLGYEVA
LSGQHVRLHPSCSLLVFGEKPSWVVFGELLSISNQYLVCVTSIDFNSLSTLCPPPLFDVS
KMESQKLQLKVLTGFGSTLLKRFCGKGNSYLLHLVSRVRSICKDERINIKVDYYQNEITL
FATLHDMDRVSSFVYDALECERKWMRNECLEKCLYHGSGVLPSIALFGAGAEVKHLELQK
RCLTVDVVHSKLDSMDDKELLSELEKYASGSICAIHKFTGTGQESVDKGKSARITFLSPD
VAQKAVELNESEFSGSILKVIPSQVGGDRKMLSFPAVRAKVYWPRRLSRGIAIVKCDVDD
VAYMVNDFFNLLVGGRIVRCEISKRSQDSVVISGLEKDLSEAEILDVLRTATSRRILDFF
LLRGDAVENPPCGACEDALLKEISTFMPKRYSHNSCSIQVFEPEQKNAFMRALITFDGRL
HLEAAKALEQLEGKVLPGFLSWQKMKCQQLFHSSLSCPAPVYPVIKKQLDSLLSSFFQLN
GVEWSLDRNANGSYRVKISANATKTVADLRRRVEELVKGKTIDHASLTPTILQLLFSRDG
IALMHSLQRETGTYILFDRRNVSVQVFGSSDQVGVVQQKLVDSLLTLHENKLIEIRLQGS
ALPPELMKEVVNRFGADLRGLKEKVPGADFSLNVRRQVISVHGNKDLKQKVEENIYEIAQ
MTGSSTERFNSEADCPICLCEIEDEYRLAVCGHLFCRLCLVEQCESAIKNQDSFPMFCAH
EGCRSLIVFNDLRYLLSSEKLEELFRASLGSFIASSGGIYRFCPSPDCSSVYQVAAPGTD
GEPFVCGACYAETCTRCHLEYHPYLSCEQYREFKEDPDSSLKEWCKGKEHVKSCPVCRYT
IEKIDGCNHIECRCGKHICWVCLASYGTSNECYDHLRSVHMAII
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgagatcgtcgtgcggcccataccctcgcgccactttccgccaacctcagcagccggaa
attccccaccggtaccgtcccaggcaacccaattacccgccggactactgctgccgtcga
ccccctcccaggcccccgagcttcatcgtcgagctcctctccgaccaacgtaaccaccgg
agagccgacatcgacgccgtgatcgctaaatgcaagttcaagcccgaaagagtcgagttc
tctccctctaatgtcatagtggtctccttgttctacacacaatgggtccacgcgctcgag
gccattgtttgtctttgggaatcgcggctcgaccgggttcataatctgtcaccgaagttg
aaccggtttgtttctgtgccgtccgatctcgaggagctccaggaccggctcagaggcttg
ttcaccgaaagaattaagaaattgatcgacggggaagcagtgaagaagtgggaggcgaag
cgggccctgttgtctaaggaatttgagcgagtttcgaagttacttctgaggccaaactct
gtttggactctggatgacttagctcagaataagaggaggagtaaatgcgaaatggaattg
gtggagagtaagattagggagttcaagtcggcgatgaactgtttgcttgcttatcttgat
gggaacgggttggaggagtgtggtgaagaaggcgttcaagtgtttaaattttcaagtgaa
gtttataattgggatcgaattcagagcataatggctcgggagtgccagagactcgaggaa
gggttgcccatttacgcttatcggcagcaaattcttcagcaaattcttacacagcaggtc
ttggtgttgattggagaaactggttcaggaaagagtacacagttggtgcagtttcttgcc
gattctggaattgctgctgggcagtctattgtatgcactcagcctcgcaagattgctgcc
acgtcgttggccgaaagggttacacaagaaagtagtgggtgttatagagaaaaatcaata
aaatttaatccgacatttttgtcagggcaggagttgaattctaaggtaatatttatgacg
gaccactgtctactgcagcactacatgaatgatatgaatatgtctgggatttcttgcatc
ataattgatgaggctcatgaaaggagcttgaatactgatctccttttggcattgatcaaa
ggtttactaggtcgaagacctagtttacgacttgttataatgtctgcaacagctgatgca
gaagtgctttcaaattattattatggctgtggaatcttttatgtggtggggaggagcttt
cctgttgatgttagatatataccatctttcagtgaaggaacttctagtgatgctacttcc
tatgtttctgatgtgctgagggtagcaacagatgtacacaaaaaagagaaagaagggaca
attcttgcctttttgacttcccagatggaagtagaatgggcttgtcagaagtttatagca
cctggtgcaattgcactgccactgcatggaaaacaaacttttgaagaccaatataatgtt
ttccaaaactaccctggaagaagaaaaattatattcgccacaaatctggctgagacatct
ctgacaattcctggggtaaagtatgtgattgattctggtatggctaaagaaagcaaattt
gaacctggaagtggcatgaatgttctaagagtttgcaggatcagccggagttctgctaat
caaagaagtggccgtgctggaagaacggaacctgggatatgttatagactctactcaaaa
aatgattttgaggcgatgcctccttgccaggaacctgagatccgtagagttcaccttggt
gttgcagttctgaagattttggctttgggcatcaagaatttaaaagattttgaatttatt
gatgcaccttgttctgaagctattgacatggccatgcggaaccttattcagttaggagct
gtgaagcaaactgatgatgtttttgaattaactaaggacggtcggtacttggttaaattg
ggtgttgagcctcggcttggtaaattaatccttggttgttataaccacagcttacgtagg
gaaggcctggttcttgcagctgtaatggcaaattccagtagtatattttgtagagttggt
aatgatgaagaaaaacttagatcagactgccttaaggtgcaattttgccatcgtgatggg
gatctctttacccttctctctgtgtacaagacatgggataatttggctcaagagaagaaa
aacacatggtgttgggaaaacagcattaatgccaaaactatgaggagatgccaagaaatg
gtaaaggatttggagtcttgccttaaacatgaactcaatatgataattcctagtacctgg
tgttggaatccacatgaatcaaatgattgtgataaatatttgaaaaaggttatactttct
tcccttgtggaaaatgttgctatgttctcgggacatgatcaacttggttatgaagtggca
ttaagtgggcaacatgttcggttgcatccttcgtgttcattgttagtatttggtgagaaa
cctagttgggtagtatttggtgaactcctgtcaatttctaatcaatatttagtctgcgtc
acttccattgatttcaactctttgtctaccctatgtcctcctcctttgtttgatgtatct
aagatggaaagtcaaaaattgcaactgaaagttttgactggttttggcagtactctgctt
aaaagattttgtgggaagggcaacagttatctgcttcatcttgtttcacgtgttaggtca
atttgcaaggacgaacgtatcaacattaaagtagattattatcagaatgagattacgttg
tttgccaccttgcatgacatggatagggtttcaagctttgtatatgatgccttggagtgt
gaacgaaaatggatgagaaatgaatgtttggagaaatgcttgtatcatggttctggtgtc
ttgccctcaatagcattgtttggagctggtgctgaggtcaagcatctggagcttcaaaaa
aggtgtttgactgttgatgtagttcattcaaaactagattccatggatgataaggagtta
cttagtgagcttgaaaagtatgcctctggtagtatatgtgctattcataagttcactggc
actgggcaggaaagtgttgataaaggaaagtcggccaggataacatttttgagtcctgat
gtggctcaaaaagctgttgaactaaatgaatctgaatttagtggctccatactgaaggtt
attccttctcaggttgggggtgatcgtaaaatgttgtcgttccctgctgttagagctaaa
gtttattggcctcgcaggctaagcagggggattgcaattgtcaaatgtgacgtggatgat
gttgcttacatggttaatgatttttttaaccttttagtaggaggaagaattgttcgttgt
gaaattagcaaaagatcccaggattctgttgtgatcagtggacttgaaaaagatctttct
gaggctgaaattttggatgtgttgaggactgctacaagtaggagaatcctggattttttt
ctgctgagaggagatgctgtagaaaatccgccatgtggtgcttgtgaagatgctctccta
aaagaaatatcaacctttatgcctaaaaggtactcccacaatagctgcagcattcaggtt
ttcgagcctgaacaaaagaatgctttcatgagagctttgattacatttgatggaagatta
cacttggaggcggcaaaagctttggaacaattagaagggaaagtattgcctgggttcctt
tcatggcaaaagatgaagtgccagcagttatttcatagctctctatcgtgccctgcccct
gtttatcctgtgatcaagaagcagttggattcattactttcaagtttttttcaactaaat
ggtgtagaatggagtttagataggaatgctaatggctcctacagagtgaagatatctgcc
aatgctacaaaaacagttgcagacctgagaagacgtgtggaggagcttgtgaaagggaag
acaatagaccatgccagcctcactccaactattttacagcttctgttctccagagatggc
atcgctctaatgcactcactacagagagagacaggaacctatattctttttgacaggcgt
aacgtcagtgtacaggtctttggttcttcagaccaagttggtgtggtccagcagaaattg
gttgactcccttttaacactccatgaaaataagctgattgagatccgacttcaaggtagt
gccttacctcctgagttgatgaaagaggttgttaacaggtttggggcagacctccgtggg
ctcaaagagaaggtaccaggggctgattttagtctaaatgttcgccgtcaagtcatttcc
gttcatggaaacaaggatttgaagcagaaagtagaagagaatatttatgagattgcacag
atgacaggaagttcgactgagaggtttaatagtgaagctgattgccccatatgtttgtgt
gagattgaagatgaataccggcttgcggtgtgtgggcatttattttgtcgtttgtgtttg
gtggagcagtgcgagtctgcaataaaaaaccaagatagtttcccaatgttctgtgcacac
gagggttgcaggtctcttattgtgttcaatgatctgagatatctcttatcaagtgagaag
ctggaggagctctttagggcctcattggggtcatttattgcgtcaagtgggggaatctac
aggttttgcccttctcctgactgctcgtctgtgtatcaggtagctgctcctgggacagat
ggtgaaccattcgtatgtggtgcatgttatgccgagacatgtacccggtgccatttagaa
tatcatccatacttgtcgtgcgagcagtaccgggagttcaaggaagatccagattcatca
ttgaaggagtggtgcaaaggaaaagaacatgtgaagagctgcccggtatgcaggtataca
attgagaagatagatgggtgcaaccatatagaatgtaggtgtgggaagcatatttgctgg
gtgtgcttggcgtcttacggaaccagcaatgaatgctatgaccatttgaggagtgttcac
atggccatcatttga
DBGET
integrated database retrieval system
