Prunus avium (sweet cherry): 110773278
Help
Entry
110773278 CDS
T05161
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110773278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110773278
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110773278
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
110773278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
S1
alpha-hel2
Motif
Other DBs
NCBI-GeneID:
110773278
NCBI-ProteinID:
XP_021833477
UniProt:
A0A6P5U2B9
LinkDB
All DBs
Position
Unknown
AA seq
326 aa
AA seq
DB search
MRELQLSLNQTQKVRLQRALEKLESLSSKANSNASVTVADSIPVNYEDGLLKGHGTSEFN
GEVVATVCGIVERVNKLVYVRALRARYKPEVGDIIVGRVIEVAPKRWRVEINYSHDAVLM
LSSMNLPDGIQRRRTALDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLGRGQ
LLTVPSYLVKRRKQHFHNLENYGIDLIIGCNGFIWVGEHVQVTDDMVVDQVNKSEQDDAK
PDENSFSPEYQEKNYTRQETRENICRAANAIRVLSTLGFNITVEVITETVDLSTSINVAI
HEMLGSEFYVLVAEKESVRRSMTKKK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagagagctacagctttcgttgaaccaaacccagaaggttcggctacagagagctctc
gaaaagcttgagtctttgtcttcaaaggccaattccaatgcttctgttactgtcgccgat
tcaatccctgttaactacgaagacggccttctcaagggacatgggacctctgaattcaat
ggtgaagttgttgccaccgtttgcggtatcgtcgagcgcgtcaataagctggtctatgtg
cgtgctttaagggccaggtacaagccggaggttggagatatcatagtggggcgtgttatt
gaggttgctccaaagcgttggagagtggagataaactatagccatgatgcagtgttgatg
ctttcttcaatgaacttacctgacggcatccagaggcgacgaactgctctggatgaactc
aacatgcgcagcatttttgaggagaatgatgtcatttgtgctgaagttcgtggttttcaa
catgatggtttacatctccaagcaagaagtcagaagtatggaaagcttggaaggggtcaa
ttgctgacagtcccttcttatctagtgaaaagacgcaagcagcacttccataatttagaa
aactatggtattgacctgataattggctgtaatgggttcatctgggttggggaacatgtt
caagtgacagacgatatggtagtggatcaagtgaacaagtctgaacaagatgatgccaaa
cctgatgaaaattcctttagtcccgaatatcaagagaaaaactacactcggcaagagaca
agagagaacatatgcagggctgcaaatgctatccgcgtattgtctactttaggcttcaat
attactgtagaagtaatcacggagacggttgatttgagcacttctataaatgttgctata
catgaaatgctcggttcagagttctatgttttggttgcagagaaggagtctgtaaggcga
agcatgaccaaaaaaaagtga
DBGET
integrated database retrieval system
