Prunus avium (sweet cherry): 110774260
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Entry
110774260 CDS
T05161
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110774260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pavi04131
]
110774260
Membrane trafficking [BR:
pavi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110774260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
AlaDh_PNT_N
TPR_MalT
TPR_19
zf-HC5HC2H_2
DUF2247
DUF2175
Motif
Other DBs
NCBI-GeneID:
110774260
NCBI-ProteinID:
XP_021834489
UniProt:
A0A6P5U5T8
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MVHSAYDSLELISDCPTKIEAIESYGPKLLLGCSDGSLKIYAPDSSSSDRSPPSDYHAHK
LHQEPYTLERNLSGFSKKPLVSMEVLESRELLLSLSESIAFHGLPNLGTIAVITKAKGAN
VYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICIGIRREY
MILNSTNGALSEVFPSGRLAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRVCWSEA
PNVVVIQKPYAIALLPRYVEVRSLRAPYPLIQTVVLRNARRILQSNNSVIVALENAVYGL
FPVPLGAQIVQLTASGDFEEALALCKLLPPEEASLRAAKEGSIHMRYAHHLFDNGAYEDA
MEHFLASQVDITYVLSLYPSIVLPKTTMVLEPEKLMDISGDSSYLSRGSSGISDDMEPST
PLHLLESEESAALESKKMSHNTLMALIKFLQKKRYGIIEKATAEGTEEVVLDAVGNNFAS
YESNNRFKKSNKGRGSIPVTSGAREMAAILDTALLQALLLTGQASAALELLKGLNYCDVK
ICEEILQKNNHHAALLELYRCNSMHHEALKLLHQLVEDSKSNQVQTELIQKLKPESIVEY
LKPLCGTDPMLVLEYSMLVLESCPTQTIELFLNGNIPADLVNSYLKQHAPNMQATYLELM
LAMDENGISGNLQNEMVHIYLSEVLDWHADLSAQQKWNEQTYSSTRKKLLSALESISGYN
PEALLRRLPTDALYEERAILLGKMNQHELALSLYVHKLHVPELALSHCDRVYESLVHQQS
LRSSGNIYLTLLQIYLNPRRTTKNFEKRITNLVSPQNIGTPKVGSANTVKSKGGRGNKKI
AAIEVADDIRVGQSSADSSRSDGDADESSEEGGSTIMLDEVLDLLSRKWDRINGAQALKL
LPRETKLQNLLPFMGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELYEQRKGVVKITSDS
MCSLCRKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKTVGRGSPLPLRKL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggtacacagtgcctacgattcattggagctcatcagcgactgccctacgaagatcgaa
gccatcgaatcgtacggtccgaagctcctcctgggctgctctgatggatctctcaaaatc
tacgctccggactcctccagttccgaccgttctccgccttccgattaccacgcgcacaag
ctacatcaggaaccgtacacactggagagaaacttgtccggtttttcgaagaagcctttg
gtctccatggaggtcctggaatcaagagagctccttctatcactgtctgagtcaatagcg
tttcatggcctcccgaacttgggcaccatcgcggtgatcacaaaggcgaagggtgccaat
gtctactcctgggacgaccgcagaggcttcttgtgcttcgcgaggcagaagcgggtctgt
attttcagacatgacggaggacgagggtttgtggaagtgaaagagtttggggttccagat
gtggtgaagtcgatgtcgtggtgcggtgaaaatatatgcatagggattagaagagaatac
atgatactgaattctactaatggtgcattgtctgaggtgtttccttcggggagattggca
ccgccattggtggtctctcttccttctggggagcttcttcttggaaaggataacattggg
gttttcgtggaccaaaatgggaagcttcttcaagaaggcagggtttgttggtcagaggct
cctaatgttgttgttattcagaagccatatgcaatagctctcttaccaagatatgttgag
gttcgatcacttcgagctccatatccattgatacagactgtagttcttcggaatgctcgt
cgtattctccagagcaacaattctgtaattgttgcattagagaatgctgtttatggtctc
ttccccgttcctcttggtgctcagattgtgcaattaacagcatctggtgattttgaggaa
gcgttggcattgtgcaagctgcttccgccagaagaagcaagtcttagagctgcaaaggag
gggtcaattcacatgagatatgctcatcatctttttgataatggggcctatgaggacgcc
atggagcattttttggcatctcaagtagatataacctatgtactttctttgtatccatct
attgttcttccaaagacaactatggttttggagccagagaagctgatggatatttctggg
gattcctcatatctctcaagaggttcatctggtatatcagatgatatggaaccctctacc
cctttgcacctactggaatctgaagagagtgcagcattagagtccaagaaaatgagccat
aacactctcatggctctgataaagttcttacagaaaaaaagatacggcataattgaaaag
gctactgctgaggggacagaagaggttgttttagatgcagtaggaaacaactttgcatcc
tatgagtctaataataggtttaagaaatcgaacaaggggaggggcagcatcccagttacc
tccggtgctagggagatggctgcgatactggatacagcactactccaagctctacttctt
actggacaggcttcagcggctttagaattactgaaaggtcttaactactgtgatgtaaaa
atatgcgaggagattctccagaaaaacaatcaccacgctgccttgttagaactctacagg
tgcaattcaatgcaccatgaagctctaaaacttttacatcaattagtagaagactcaaaa
tctaaccaagtgcaaactgaattgatccaaaagttaaagcctgagtcaattgttgaatat
ctcaagcctctttgtgggactgatcccatgcttgtcctggagtattcaatgcttgttctg
gaaagttgtccaacacagacaattgagctctttttgaatggaaatattccagcagacctg
gtcaactcttatttgaagcagcatgctcccaacatgcaggccacatacttggagcttatg
cttgcaatggatgaaaatgggatctctggaaatctgcaaaatgaaatggtacatatctat
ctatcagaagttcttgattggcatgctgatttaagtgctcagcagaaatggaatgagcaa
acttactcctcaacaagaaaaaaattattgtctgctttagagagtatttcaggatataac
ccagaggctttgttgaggcgtcttccaacagatgctttatatgaagagcgtgcaattttg
ttgggaaaaatgaaccaacatgagcttgccttatctctatatgttcataagcttcatgtt
cctgagctggcactgtcccattgtgatcgagtgtatgagtcattggttcatcagcaatct
ttaagatcttctggcaatatatacctcactctattgcaaatttatcttaatccgaggaga
acaaccaagaactttgagaagcgaattacaaatttagtatcgcctcagaatatcggtaca
ccaaaggttggttctgcaaatacagttaaaagtaaaggaggtcgtggaaataagaaaatt
gctgcaatagaggtggcagatgacataagagtcggtcaaagtagcgctgacagtagcagg
agtgatggagatgcagacgagtctagtgaggaaggaggttcgacaatcatgcttgatgag
gtcctggatttgttaagccgaaagtgggacagaataaatggagctcaggcgctcaaactt
ttgccaagggaaactaagctacagaatttgcttccatttatgggacccctgttgagaaaa
tccagtgaagcatacaggaacctttcagtgatcaagagtttgagacaaagtgagaacctg
caggttaaagatgaactctatgaacaaaggaaaggggtggtgaagatcaccagtgatagc
atgtgctccctttgcaggaagaaaataggaacaagtgtctttgcagtgtatccgaacgga
aaaacaatagtacattttgtctgcttcagagactcacaaagcatgaaaactgtgggcaga
ggatcgcctttgccgctaaggaagctatga
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