Pseudomonas avellanae: BKM03_00020
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Entry
BKM03_00020 CDS
T05369
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pavl
Pseudomonas avellanae
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pavl03032
]
BKM03_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_00020 (gyrB)
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BKM03_00020 (gyrB)
DNA replication proteins [BR:
pavl03032
]
Prokaryotic type
DNA Topoisomerases
BKM03_00020 (gyrB)
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BKM03_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AVB17854
UniProt:
A0AAD0GMY7
LinkDB
All DBs
Position
3461..5878
Genome browser
AA seq
805 aa
AA seq
DB search
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGESDSTGTQIHFKPSADTFKN
IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNEV
FHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ
EGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD
FLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG
RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK
GKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKTLKRLSR
LYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLREDRERNV
WLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERKKPVTEF
KQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNT
LMGDAVEPRRDFIESNALAVSNLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaaccaaacgtacgactcgtccagcattaaagtgctgaaaggacttgatgcc
gtacgcaagcgtcccggaatgtacatcggtgatacagacgatggcagcggtctgcaccat
atggtgttcgaggtggttgataactcgatcgacgaagcattggcaggccattgcgacgac
atcagcatcatcatccatccagacgaatctatcaccgtgcgcgacaacggccgcggtatt
ccggtagacgtgcataaagaagaaggcgtgtcggcagccgaggtcatcatgaccgtgctc
cacgcgggcggtaagttcgatgacaactcctacaaagtatccggcggtttgcacggtgta
ggtgtttccgtggttaacgccctttcagaacttctgttgctgacagtacgtcgcagcggc
aagatctgggaacagacctacattcacggtgttccacaagagccgatgaaaatcgttggc
gaaagcgacagcaccggtacccagatccacttcaagccatctgctgacaccttcaagaat
atccacttcagctgggacattctggccaagcggattcgtgaactgtcgttcctgaactcc
ggtgttggcatcgtcctcaaggacgagcgtagcggcaaggaagaactgttcaagtacgaa
ggcggtttgcgtgcgttcgttgaatacctgaacaccaacaagacgccggtcaacgaagtg
ttccacttcaatgtccagcgcgatgacggtatcggcgtcgagattgctctgcagtggaac
gacagcttcaacgaaaacctgttgtgcttcaccaacaacattccacagcgcgatggcggc
actcacctggtgggattccgttccgcactgacacgtaacctgaacaactacatcgagcag
gaaggtctggccaagaagtacaaggtcgcgaccacaggtgacgatgcgcgcgaaggtctg
actgcaattatctcggtcaaagtacctgatccaaagttcagctcgcagaccaaagacaag
ctggtttcgtccgaagtcaaaactgcagtcgaacaggaaatgggcaagtacttctccgac
ttcctgctggaaaacccgaacgaagccaaagccgtcgtcggcaagatgatcgacgcagcc
cgtgcccgtgaagccgcgcgcaaagcccgtgagatgactcgccgtaaaggcgcgttggac
atcgccggcttgccaggcaaactggctgactgccaggaaaaagaccctgccctctccgaa
ctgtatctggtggaaggggactctgctggcggatcagccaagcagggacgtaaccgtaga
acccaggccatcctgcctctcaagggcaagattctgaacgttgaaaaagcacgtttcgac
aagatgatctcttctcaggaagtgggcaccttgatcaccgcgctgggctgtggcatcggc
cgcgacgagtacaacatcgacaagttgcgctatcacaacatcatcatcatgaccgatgct
gacgtcgacggctcgcacatccgcaccctgctgctgaccttcttcttccgtcagttgccg
gagctgattgagcgtggctacatctacatcgctcagccgccgctgtacaaggtcaagaaa
ggcaagcaggagcagtacatcaaggacgacgaggccatggaagaatacatgacccaatcg
gcccttgaagacgccagcctgcacctcagcgagtcggctccaggtatctcgggcacagcg
ctggagaaactggttcacgacttccgcatggtcatgaagacccttaaacgcctgtcgcgt
ttgtacccacaggaactgaccgagcacttcgtctatctgccgccaatcactctggagcag
ctgtcggaccacgagggcatgcaagcctggctcgcactgttcgacgcgcgtctgcgcacc
ggtgagaagtcgggtctggtgtacaaggccagcctgcgcgaagaccgtgaacgtaacgtc
tggctgccagaggtcgaactgatctcccacggcctgtcgaactacatcaccttcaaccgc
gacttctttggcagcaacgactacaagaccgttacagcgctgggcgcgcagataagcacg
ctcctggaagaaggcgcgtacgtgcaacgtggcgagcgcaaaaagcccgtcaccgagttc
aagcaagccctcgcctggctgatggctgaaagcaccaagcgccataccatccagcgctac
aaaggactgggtgaaatgaacccggaccaactctgggaaaccaccatggacccaagcgtg
cgtcgcatgctgaaagtcaccatcgaagacgccatcggcgctgaccagatcttcaacacc
ctcatgggtgatgcggtcgaaccacgccgtgacttcatcgagagcaatgcgctggcggtg
tccaacctggacttctga
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