KEGG   Pseudomonas avellanae: BKM03_01955
Entry
BKM03_01955       CDS       T05369                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pavl  Pseudomonas avellanae
Pathway
pavl03030  DNA replication
pavl03410  Base excision repair
pavl03420  Nucleotide excision repair
pavl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pavl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BKM03_01955
   03410 Base excision repair
    BKM03_01955
   03420 Nucleotide excision repair
    BKM03_01955
   03440 Homologous recombination
    BKM03_01955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pavl03032]
    BKM03_01955
   03400 DNA repair and recombination proteins [BR:pavl03400]
    BKM03_01955
Enzymes [BR:pavl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BKM03_01955
DNA replication proteins [BR:pavl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BKM03_01955
DNA repair and recombination proteins [BR:pavl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BKM03_01955
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BKM03_01955
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 WHD_BrxR
Other DBs
NCBI-ProteinID: AVB18178
UniProt: A0AAD0DXW5
LinkDB
Position
complement(376305..379070)
AA seq 921 aa
MTQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPLAVVFD
AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM
GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKLEEHRAM
AFLSYELATIKIDVPLDIELDQLHCSEPDRDKLMELYAELEFKSWIEDLQRDAKRAGQEL
VVEEPTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQ
THEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGGD
QAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQ
IAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLARIERQGALVD
ANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQPS
TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTG
RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAF
RNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAY
VDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAP
MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGA
AELAVPLLVEVGVGNNWDEAH
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgacccaagcgccgctcgtcctggtagacggttcttcttacctctaccgcgcgttccat
gccctgccacccctgaccacgtccaaagggttgcccaccggcgccgtcaagggcgtgctc
aacatgctcaaaagcctgcgccgccaatacccggacagcccgctcgcggtcgtcttcgat
gccaagggcgggacgttcagggacgcgctgtacacagactacaaggccaaccggcccagt
atgccggatgacctgcgcgtgcaggtcgatctgctgcacgcctgcgtgaaaggcatgggc
tatccgtttttgtgcgttgaaggtgtcgaagcggacgacgtaatcggcaccctggcgcgc
agcagcgcggcggcagatcgcccggtggtcatttcaaccggcgacaaggacatggcgcag
ctggtcgatggccatatcacgctggtcaacactatgaccggcagcgtgctggacgtagca
ggcgtgaaagaaaaattcggcgtcggccccgagcacatcatcgactacctggcgttgatg
ggcgacaaggtcgataacatccccggcgtgccaggcgttggcgaaaaaaccgctgtcggc
ctgctggtgggcgtgggcggcgggatcaaggagctttacgacaacctcgaaatggtcgcg
accctgccgatccgcggcgccaagaccctggccgccaagctcgaagaacaccgcgcgatg
gccttcctctcctatgagctggcgaccatcaagatcgacgtgccgctggacatcgagctg
gaccagttgcattgcagcgagccggaccgcgacaagctgatggagctgtacgccgagctg
gaattcaagagctggatcgaagacctgcaacgcgacgccaaacgcgccggtcaggagctg
gtggtcgaagagccaacagtggcagccaaggaagcagcgtacgaggtcattctcgagcaa
gagcagttcgacgcctggctgaaaaagcttcaggcggcaccgcttttcgccttcgttacc
cagagcaacggcaccgacgcccagcgtgcgcaactggtgggcctgtctttcgccatccag
acccacgaagccgcctacatcccgctgacccactcctacatgggcgtgccgcagcaactg
gatcgcgacaccgtcctcaagacgctcaagccgctgctggaagacccgaacaagatcaag
gtcggtcagcacgccaaatttgccattaacctgctcgccaactgcgcgatcggcggcgat
caggcgcagggcatcgagctgcagggtgtgcgctttgacaccatccttgaatcctacgtg
ctggactccaccgccactcgccatgaccgcgacagcctggtggccaagtacctgacgcac
acgccgatcaacttccaggacatcgctggcaagggtgccaagcagctcaccttcgaccag
atcgccatcgagcaggcgggcaattacgccgccgaagaggccgacctgaccctgcgcctg
catgaagtcttcgaagcccgcctggcggcgattccgtccttgcagccggtgctcaacgat
atcgaaatgccgctggtgccggtgctggcccgtatcgaacgtcagggcgcgctggtcgat
gccaacctgctgggcatccagagcgttgagttgggcgacaagatgaccgcactggagcgc
gaggcgttcgccattgccggtgaagaattcaacctcggctcgcccaagcagctcggcgtg
attctctacgaaaaactcggcatgccgatcctgagcaagaccgctaccggtcagccatcg
acggccgaggcggtgcttgccgaactcgccgaacaggacttcccgctgcccaaggtgctg
atgcagtaccgctcgatgagcaagctcaagagcacctacaccgaccgcctgcccgagcag
atcaacccgcgcaccgggcgcattcacacctcctatcatcaggcggtagcggtgaccggg
cgcttgtcttccagcgacccgaatctgcagaacatcccgattcgtaccgccgaaggccgc
cgcatccgtcaggcgttcgtagcgcccaagggttacaagctgctggcggctgactattcg
cagattgaactgcgcatcatggcgcacctggccaaggacgaaggcttgctgcatgcgttc
cgcaatgacctggacgttcaccgcgcgacagcgtcggaagttttcggcgtcgaactggag
aacgtcaccaccgacatgcgccgcagcgccaaagcaatcaacttcggcctgatctacggt
atgagcgcatttggcctggccaaacagatcggcgtggaccgcaagcagtcgcaggcctat
gtcgatcgctactttgcccgctaccccggcgtgctggactatatggagcgcacacgcacc
caggccgccgagcagggcttcgtcgagactattttcggccgtcgcctgtacctgccggac
atcaacgccaagaacccttcactgcgcaacggcgcgcaacgcatggcgatcaacgcgccg
atgcagggcacggcggcggacatcatcaaaaaagcgatggtggcggtgaatggctggctg
gacgaatccggcctggatgcacgggtcatcctgcaggtgcacgatgaactggtactggaa
gtgcgcgaagacctggtcgatcagatcagcgagcagatccgtccgcatatgagcggcgcg
gcagaactggcagtgccgctgctggtggaagtcggggttggcaacaactgggacgaggca
cattaa

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