Pseudomonas avellanae: BKM03_02615
Help
Entry
BKM03_02615 CDS
T05369
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl00260
Glycine, serine and threonine metabolism
pavl00460
Cyanoamino acid metabolism
pavl00630
Glyoxylate and dicarboxylate metabolism
pavl00670
One carbon pool by folate
pavl00680
Methane metabolism
pavl01100
Metabolic pathways
pavl01110
Biosynthesis of secondary metabolites
pavl01120
Microbial metabolism in diverse environments
pavl01200
Carbon metabolism
pavl01230
Biosynthesis of amino acids
pavl01240
Biosynthesis of cofactors
pavl04981
Folate transport and metabolism
Module
pavl_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
BKM03_02615 (glyA)
09102 Energy metabolism
00680 Methane metabolism
BKM03_02615 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
BKM03_02615 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
BKM03_02615 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
BKM03_02615 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
BKM03_02615 (glyA)
Enzymes [BR:
pavl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
BKM03_02615 (glyA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
AVB18296
UniProt:
A0AAD0DV06
LinkDB
All DBs
Position
complement(514952..516205)
Genome browser
AA seq
417 aa
AA seq
DB search
MFSKQDQIQGYDDALLSAINAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYP
GKRYYGGCEHVDKVEQLAIERAKQLFGADYANVQPHSGSQANAAVYLALLQAGDTVLGMS
LAHGGHLTHGAKVSFSGKLYNAVQYGIDTSTGLIDYDEVERIAVECQPKMIIAGFSAYSK
TLDFPRFREIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLI
LAKANEELEKKFNSAVFPGGQGGPLMHVIAAKAVCFKEALEPGFKAYQQQVIDNAQAMAQ
VFIERGFDVVSGGTDNHLFLVSLIRQGLTGKEADAALGRAHITVNKNSVPNDPQSPFVTS
GLRIGTPAVTTRGFKVTQCTELAGWICDILDNLGDADVEANVASQVAALCADFPVYR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaagcaagaccagattcagggttatgacgacgcactgttgtcggcgatcaat
gccgaggagcagcgtcaggaagaccatatcgagctgatcgcctcggaaaactacaccagc
aagcgcgtgatgcaggcccagggcagcggcctgaccaacaaatacgccgaaggctatccg
ggcaagcgttactacggcggctgcgagcacgtcgacaaggtcgagcaactggccatcgaa
cgcgccaaacagctgttcggcgccgattatgccaatgtccagccgcactccggcagccag
gccaacgcggcggtctacctggcgttgctgcaggcaggcgacacggtgctgggcatgagc
ctcgcgcacggcggccatttgacccacggtgccaaggtcagcttttccggcaagctctat
aacgccgtgcagtacggcatcgacaccagcaccggcctgatcgattacgacgaagtcgaa
cgcattgccgtcgaatgccagccaaaaatgatcattgccggtttctcggcctattccaaa
acgctggatttcccgcgcttccgtgaaatcgccgacaaggtgggtgcctacctgttcgtc
gatatggcccacgtcgcaggcctggtggctgccggtctctaccccaacccactgccgtat
gccgatgtggttactaccaccacgcacaagaccctgcgcggtcctcgtggcggcctgatt
ctcgccaaagccaacgaagaactggagaagaaattcaattcagccgtcttccccggtggt
cagggcggcccgttgatgcatgtcattgcggccaaggccgtgtgcttcaaggaagcgctg
gagccaggcttcaaggcgtatcaacagcaggtcatcgataacgcacaagcgatggcgcag
gtgttcatcgagcgcggcttcgatgtggtttccggcggcaccgacaaccacctgtttctg
gtcagcctcatccgtcagggcctgaccggcaaggaagccgacgccgcgctgggccgtgcg
cacatcaccgtcaacaagaactcggtgcccaacgacccgcagtcacccttcgtgacctcg
ggcctgcgcatcggcacaccggccgttaccacgcgcggcttcaaggtgacccagtgcacg
gaactggcgggctggatatgcgacattctcgacaacctcggcgacgccgatgtcgaggcc
aacgtcgccagccaggtcgcagccctgtgcgccgatttcccggtttatcgctga
DBGET
integrated database retrieval system