Pseudomonas avellanae: BKM03_04470
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Entry
BKM03_04470 CDS
T05369
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BKM03_04470 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_04470 (recC)
Enzymes [BR:
pavl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BKM03_04470 (recC)
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM03_04470 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AVB18609
UniProt:
A0AAD0DU70
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All DBs
Position
870976..874452
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AA seq
1158 aa
AA seq
DB search
MSVTTPLSAGFMVVQGNRPDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DAQDDDNGGCGIAAAIEVQLPGSFMWTLYRRILGSDEIPQTSLLDKTPLTWRLMRLLPAL
INQPHFEPLQRFLTDDTDLRKRYQLSERLSDLFDQYQVYRADWLEDWAAGLHQLRDGRGQ
PRPLSTANCWQAELWRALLDDVGAEGMAQSRAGVHRRFIERIGNMTEAPPGLPSRVIVFG
ISSLPAQALEALAGLAKFSQVLLCVHNPCRHHWTDIVADKDLLRHQYKRQARKTGMPMIL
DPQALHQHAHPLLAAWGKQGRDYINLLDSHDDPRSYRSSFKDERIDLFSEVEPTNLLNQL
QDDILELRPLDETREIWPAIDPLEDRSVRFHIAHSAQREVEVLHDQLLARFSKDPNLRPR
DVIVMVPDIDSYAPHIRAVFGQIDREDRRFIPFTLADQGQRGREPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFRIQERDLPTLHRWIEGAGIRWGLNAQQRAGLGLPDALEQNS
WHFGLRRMLLGYAVGAGTAYDGIEPYDEIGGLDAALIGPLVALIDALQVAHAELSTPATP
EQWGARLQAILQLFFIAESEHDDYLLAQLETLRENWLETCAAVNLIDELPLTVVREAWLA
GLDQGRLSQRFLAGSVNFCTLMPMRAIPFKVVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEAVLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWKLAG
EADPDSKLDDGERLLKALTVHHPLQPFSAHYFHAGTGYFSFAREWRLLHETDLQVPAPQA
LAAHEQEEPLSIAQLQDFLRNPVKHFFSQRLKIYFEVAEAPLADEEPFVLDALERYGLSE
SLLSAAMVSADTIDVALKTQALKLQASGLLPLAGFGTCMQDELIEPLPDVLRRYHDLLTL
WPETLSSALPISFSHRGVSIDGWLGGLHRNTRGELLLVTAIPNSIGSKKTRKWHRLIRPW
VNHLVACACELPLSTALVASDETLMLDPLEKDAAVTTLNHLLMAWLRGMQQPLPVAVKTA
FAWLGQPADKAEAAARKAYEGDGQTTDGERRESTALARQFADFDALMDSEEFAGWCETLY
KPIYDAPWQSLSGGEGGA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttacaaccccgctgagtgcaggtttcatggtggttcaaggcaaccgcccggat
gaactgcgcagtctggttgtgtcctggatgcgtcgctatcccttggcaccgcttgagaac
gagattgcgctggtgcagagcaacggcattgcgcaatggctcaaacttgcgctggctgaa
gacgctcaggacgatgacaacggcggctgtggcattgcggctgcgatagaggttcagcta
cccggcagtttcatgtggacgctgtatcgcaggattctcggcagcgatgaaattcctcag
acgtcgctgctcgacaagactccgctgacttggcgcttgatgcgcttacttcccgcactg
atcaatcagccccacttcgagccactgcagcgttttctgaccgacgacaccgacctgcgc
aagcgctatcaattgtccgaacgcctgtctgatctgttcgaccaatatcaggtttaccgc
gctgactggctggaagactgggccgctggcctgcatcaattgcgcgacggacgaggtcag
ccacggcctttgtccactgccaattgctggcaggccgagttatggcgcgcactgctggat
gatgtcggagccgagggcatggcccagagtcgtgccggcgtgcatcggcgcttcatcgag
cggatcggcaacatgaccgaagcgccacccggcttgccatcgcgggtaatcgtattcggc
atatcgtcactcccggcgcaggcgctggaagcactggcaggattggcgaagttcagccag
gtgctgctttgtgtgcacaacccctgccgtcaccactggaccgacatcgtcgccgacaag
gacctgctgcgtcaccagtacaaacgccaggcccgcaagaccggtatgccgatgatcctc
gatccgcaagcgctgcatcagcatgcgcatccgctgcttgctgcctggggaaagcagggc
cgtgattacatcaacctgctggacagccatgacgatccgcgcagctatcgttcctcattc
aaggacgagcggattgacctgttcagtgaggttgagccaaccaatctgctcaaccagtta
caggacgatattctcgaactgcgcccgctggatgaaacgcgggagatatggccagccatt
gacccgcttgaagaccgctcggtccggtttcacattgcccacagcgcgcagcgtgaggtg
gaagtgctgcacgaccagctcctggcgcggttcagcaaagaccccaacctgcgcccgcgt
gacgtgattgtcatggttccggacatcgacagctacgcgccacacattcgcgctgtcttc
ggccagatcgatcgcgaagatcgccgcttcattcccttcacgctggccgaccaggggcag
cgtggtcgtgagccattgctgatcgctgtagaacatctgctcaagcttcccgacagccgc
ttcccggtcagcgaaattctcgacctgctggacgttccggccttgcgagcgcgcttccgg
attcaggagcgcgatctaccaaccctgcaccgctggattgaaggcgcaggcatccgctgg
ggcctcaatgcgcagcaacgcgccggcctgggcttgccggatgcgctggaacagaacagc
tggcactttggtctgcgccgtatgttgctgggttacgccgtgggtgccggtacggcttat
gacggcatcgagccctatgacgaaatcggcgggctggatgccgcgttgattggtccgctg
gtcgcgttgatcgatgcgctccaggtcgcccatgcggaactgtccacgcccgccacgccg
gaacaatggggcgcacgcctgcaagccattctgcagctgttcttcattgctgaaagcgag
catgacgactacctgcttgctcagctcgaaacactgcgtgaaaactggctggaaacctgt
gcagcggtaaacctgattgatgaactgccacttacggtggtccgtgaagcttggctggcc
gggcttgatcaaggccgcttgtctcagcgttttctggcaggctcggtcaacttctgcaca
ctgatgcccatgcgcgccatcccgttcaaagtcgtctgcctgctgggtatgaacgatggt
gattacccgcgcgcgcaacccccgctggacttcgacctgatgggcagtgattaccgcccc
ggtgaccgttcgcgtcgtgaagatgaccgctatctgttgctcgaagccgtgctctcggcg
cgggatcaactgtacgtcagctgggttggccgcagcattcgtgacaacagcgagcgtcct
gcatcggtactgattggccagttgcgtgatcacctggccagtggctggaaactggcaggc
gaagccgaccccgacagcaagctggacgacggcgaacgcttgctgaaagcactgacggtg
catcatccgctgcaaccgttcagcgcccattactttcatgcaggcaccggctacttcagc
ttcgcccgcgaatggcgcctgctgcatgaaaccgaccttcaggtgcccgcgcctcaagcg
cttgccgctcacgagcaggaggagccactgtccattgcgcaattgcaggacttcctgcga
aacccggtaaagcactttttcagccagcgcctgaagatctatttcgaggtcgccgaagcg
ccgctcgctgatgaagaaccgttcgtgctcgacgcccttgagcgctacggcctcagtgaa
agcctgctcagcgccgcgatggtttccgctgacacgatcgatgtcgccctgaaaacccaa
gccctgaaactgcaagccagcggcctgctgcctctcgccgggttcggcacctgcatgcag
gacgaactgatcgagcctttgccggacgtattaaggcgttaccacgatctgctgacgctg
tggcccgaaaccttgagcagtgccttgccgatcagtttcagccaccgtggcgtcagcatc
gacggctggcttggcgggttacaccgcaacacccgcggcgagctgttgctggtcacggcg
attcccaacagcattggctcgaaaaagacccgtaagtggcatcggcttattcgtccgtgg
gtgaatcatctggtggcctgcgcctgtgaactgccattgagtaccgcactggtggccagt
gatgaaaccctgatgctcgacccgctggaaaaagatgctgccgtcaccacgctgaaccac
ctgctgatggcctggctgcgcggcatgcagcaaccgctgccggtggccgtcaaaaccgcg
tttgcctggctgggccaacccgccgacaaagccgaagctgccgctcgcaaagcctacgaa
ggtgacgggcagaccaccgatggcgaacgacgcgaaagcaccgcgctggcccggcagttt
gcggacttcgacgccttgatggacagcgaggaattcgcgggctggtgcgagacactctac
aagccgatttacgacgcgccctggcaatcgttgtccggcggggagggtggcgcatga
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