Pseudomonas avellanae: BKM03_04480
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Entry
BKM03_04480 CDS
T05369
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BKM03_04480 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_04480 (recD)
Enzymes [BR:
pavl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BKM03_04480 (recD)
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM03_04480 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
AAA_17
AAA_28
T2SSE
PhoH
nSTAND3
NTPase_1
DEAD
AAA_5
NACHT
Motif
Other DBs
NCBI-ProteinID:
AVB18611
UniProt:
A0AAD0DVG1
LinkDB
All DBs
Position
878138..880231
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AA seq
697 aa
AA seq
DB search
MSRSFDDLLPTALDDISLADLSPLTRVDDLLMLLERWVERGWLRALDRAFVAFLSDLDPQ
ADPLVLVAAALTSHQLGHGHVCLDLYETLKEPDFALSLPPEGDQQGGAMLLPSQLLAALD
GAAWCQALARSMLVAQVTDSSAEALQKPLVLAERRLYLRRYWTYERRIAAALRRRLAQPD
APPEDLPQRLNALFGPANSAPDAIIDWQKLACALATRRAFSIITGGPGTGKTTTVVRLLA
LLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQSLDVSAEVRQKIPSEVTTVHRLL
GSRPGTRHFRHHAGNLLPLDVLVVDEASMIDLEMMANLLDALPPHARMVLLGDKDQLASV
EAGAVLGDLCRDAEDGFYSPQTQAWLEAVSGEDLSKGSLREGDAQQHPLAQQVVMLRHSR
RFGQGSGIGQLARLVNQQQDQQARALLSAGSHADLFALALKGEQDLKFERLVLEGLGQGE
QGPQGYRHYLNVLGVERPAAGAELDDECWTRWARSVLDAFDSFQLLCAVRKGPWGVEGLN
QRITHALFNAQLIESEQQWYEGRPVLMTHNDYGLGLMNGDIGITLRLPERDGEGKQVLRV
AFPRNDGSGGVRFVLPSRLNEVETVYAMTVHKSQGSEFAHSALILPEALNPVLTKELIYT
GITRAKHWFSLIEPRQGIFEEALRRKVKRLSGLMLGL
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctcgttcgacgacctgttgcccactgcgctggacgacatcagcctcgccgac
ttgagcccgttgacccgcgtcgacgatctgctgatgctgctggaacgctgggtcgagcgc
ggctggttgcgcgccctggaccgggcttttgtcgcgttcctcagcgacctcgacccgcag
gccgatccgctggtgctggtcgctgcggccctcaccagccatcaactgggccacggccat
gtctgccttgatctttacgagaccttgaaagagccggacttcgccctgtcactgccgccc
gaaggcgatcagcaaggcggagcaatgctgctgccctcgcaactgctcgcagcgctggat
ggcgcagcgtggtgtcaggcgctggcgcgcagcatgctggtcgcccaggtcacagactca
agtgccgaggcgctgcaaaaacccttggtgctggcagagcgacgtttgtacctgcgccgc
tactggacctacgaacgccgcatcgccgcagccctgcggcggcgcttggcacaacctgat
gctccgcctgaagatttgccgcaacgcctgaacgctttgttcgggcctgcgaactcagcg
ccggacgccatcatcgactggcagaaactggcctgcgcactggcaacccgccgtgcattc
agcatcatcaccggcggtcccggcacgggcaaaaccaccaccgtggtgcgcttgctggcg
ttgcttcaggctcctgccgtgcagagcggccagccgctgcgcattcgtttggcagcgccg
acgggcaaggcggcagcacgtctgaccgaatccatcagccaacaagtgcaaagcctggac
gtcagcgccgaggttcggcagaaaatccccagtgaagtcaccaccgtgcaccgcctgctg
ggcagtcgtcccggtacgcgtcacttccgtcatcacgctggcaacttgctgccactggac
gtgctggtcgtcgacgaagcgtccatgatcgacctggaaatgatggccaacctgctcgac
gctctgccgccgcacgcgcgcatggttctgctcggcgataaagaccaattggcttccgtc
gaggcgggcgcggtactgggtgatttgtgtcgcgacgccgaagacggcttctacagccca
caaactcaggcctggcttgaagctgtcagcggcgaagacctcagcaaaggctcgttgcgc
gagggtgatgcgcagcaacatccactggcccagcaagtggtcatgctgcgccactcgcgg
cgttttggccaaggcagcggaataggccagttggcccggctggtcaaccagcaacaggat
caacaggcgagggcgctgctgtcggcaggcagtcacgccgatctgttcgccttggcgctc
aagggcgagcaagacctcaagttcgagcggctggtgctggaaggccttggccaaggcgaa
caaggcccgcagggttatcggcattacctgaacgtgctcggggtcgagcgcccggcagcc
ggcgctgaactggacgacgaatgctggacccgatgggcacgctcggtactcgacgccttc
gactcattccagttgctctgtgctgtacgcaaaggcccgtggggcgtagaaggcttgaac
caacgcatcacccatgcgttgttcaatgcgcagctgatcgaaagcgaacagcaatggtac
gaaggccggccagtactgatgacccacaacgactacggccttggcttgatgaacggcgac
atcggcatcaccttgcgactgcccgagcgcgatggcgagggcaaacaggtcctgcgcgtc
gccttcccgcgcaacgatggcagcggcggcgtgcgcttcgtcctgcccagccgcctcaac
gaagtcgaaaccgtctacgccatgaccgtgcataaatcccaaggctcggaattcgcccac
tccgccctgatcctgcccgaagccctaaacccggtactgactaaagaactcatctacacc
ggcatcacccgcgccaaacactggttcagcctgatcgagccgcgccagggcatcttcgaa
gaagccctgcgccgcaaagtcaaacgcctgagcggcttgatgctcgggctttga
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