KEGG   Pseudomonas avellanae: BKM03_06185
Entry
BKM03_06185       CDS       T05369                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pavl  Pseudomonas avellanae
Pathway
pavl02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pavl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BKM03_06185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pavl03021]
    BKM03_06185
Transcription machinery [BR:pavl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BKM03_06185
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF GerE HTH_23 HTH_38 TnsD DUF2774
Other DBs
NCBI-ProteinID: AVB18875
LinkDB
Position
1211199..1211708
AA seq 169 aa
MSSVDHVHQQTVHTLYADHHRWLCGWLRKRLDCVDHASDMAQDTFMRVLTQRKAPELREP
RAYLSTIARSLMIDMFRRRTVEQAYLETLASRPEALDISPETRFLIIETLLEIDRILNGL
GARTREIFLMAQLDGLSYVEIGRQLHVSVNTVKKHAVRALMHCLLATEE
NT seq 510 nt   +upstreamnt  +downstreamnt
atgtcctccgtcgaccacgtgcatcaacagaccgtacataccctctacgccgatcatcat
cgctggctgtgtggctggctgcgcaaacgcctggactgtgtcgatcacgcttcggacatg
gctcaagataccttcatgcgggttctgacccaacgcaaggcgcctgaactgcgtgagccg
cgtgcgtatttgagcaccatcgcgcgcagcctgatgatcgatatgttccggcgccggacg
gtggaacaggcgtacttggaaacgctggcttcccgacccgaagcgctggatatctcgccg
gaaacacgctttttgatcattgaaaccttgctggaaatcgaccggatcttgaatggcctg
ggcgctcgcactcgggagattttcctgatggcccagttggacggcttgagctatgtggag
atcggccgacaactgcacgtgtcggtcaacactgtcaagaaacacgcggtgcgcgcgttg
atgcattgcctgctggccacggaggagtaa

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