Pseudomonas avellanae: BKM03_07055
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Entry
BKM03_07055 CDS
T05369
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_07055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_07055
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM03_07055
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM03_07055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AVB23034
UniProt:
A0AAD0GTK5
LinkDB
All DBs
Position
complement(1391429..1392883)
Genome browser
AA seq
484 aa
AA seq
DB search
MLKALKKMFGKSEAEQRAPIPTASIPASPSPVPGDQPDHAVQTQALDTVSEPSKARAPRT
DKPRAERPRRERVVKPPAPEWKLEDFAVEPQEGKTRFHDFNLAPELMHAIQDLGFPYCTP
IQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTR
ELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGE
VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWT
TDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIE
ERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL
PEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRAVV
RQTT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcacttaaaaagatgttcggtaaaagcgaggctgagcagcgcgcgcctata
ccgacagcctccatccccgcttccccttcgcccgtcccaggcgaccaaccggatcatgct
gtccagacccaggctctggacaccgtcagcgagccctccaaagccagagcgccgcgtacc
gacaaaccaagggccgaacgcccgcgccgcgaacgcgtggtcaaaccgcccgcgccggaa
tggaaactcgaagatttcgccgtcgagccacaggaaggcaagacccgcttccacgacttc
aacctcgcgcctgaactgatgcacgcgatccaggatctgggtttcccgtactgcacgcct
attcaggcaggtgtgctgggtttcaccctcaagggcaaggatgcgatcggccgcgctcag
acaggcaccggcaagaccgctgcgttcctgatctcgatcatcgagcaactgacccagacg
ccgccgccggcagagcgctacatgggcgaaccccgcgcgctgatcatcgcgccgacccgc
gaactggtggtgcagatcgccaaggacgccgccgacctgaccaaatacaccaacctgaac
gtcatgacgttcgtcggtggcatggacttcgacaaacagctcaagcagcttgaagcgcgg
cactgtgacattctggtcgccacgcctggtcgtctgctggacttcaaccagcgcggcgaa
gtgcacctggacatggtcgaggtcatggtgctcgacgaagcggaccgcatgctcgacatg
ggcttcatcccgcaggtccggcagatcattcgccagaccccacacaagggcgaacgccag
accctgctgttttccgcgaccttcaccgaagacgtgatgaacctcgcaaagcagtggacg
accgacccttccatcgtcgagatcgaatccctgaatgtcgccagcgacaacgtcgaacag
catatctatgccgttgccggtgccgacaaatacaagctgctctacaacctggtcaccgac
aacggctgggaacgggtcatggtctttgccaaccgcaaggatgaagtgcgccgcatcgaa
gaacgcctggtgcgcgatggcgtcaacgccgcgcaactgtcaggcgatgtaccgcagcac
aagcgcatcaagacccttgagggcttccgcgaaggcaagatccgcgtactggtcgccacc
gatgtggccggtcgcgggattcacatcgatggcatcagccacgtgatcaacttcaccctg
ccggaagtcccggatgactacgtgcaccgcatcggccgtaccggtcgcgcaggtgccgat
ggcgtctcgatcagctttgccggggaagacgactcctaccagttgcccgccatcgaagag
aagctgggccgcaagatcagctgtgaaacaccgccgactcatctgctcagagccgtggtg
cgacaaaccacctga
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