Pseudomonas avellanae: BKM03_09380
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Entry
BKM03_09380 CDS
T05369
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pavl
Pseudomonas avellanae
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pavl03016
]
BKM03_09380 (rnd)
Enzymes [BR:
pavl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BKM03_09380 (rnd)
Transfer RNA biogenesis [BR:
pavl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BKM03_09380 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AVB19433
UniProt:
A0AAD0DZC0
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All DBs
Position
1869433..1870566
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AA seq
377 aa
AA seq
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MAIDIHWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIEPL
LINNWAPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQEVLNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRLSDDKYAWL
LDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREVQARARNLPRNRIV
REHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIQTAANVPAAEWPPALPEPL
PIDAAGSIKRLRAIGQQYAEQLDMTPELMLRKKTLEALLKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLASSGEES
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacgacgacagcctcgcccggcattgcgcacaa
tggcagtcgctgccttttgtcgcgctcgacaccgagtttatgcgggtcgacacgttttac
cctatcgcagcgttgctgcagattggcgacgggcaaagcgcctggctaattgagccgttg
ctgatcaacaactgggcacctctgtctgcgctgctcgaaaaccctgacgtcatcaaagtt
gtgcatgcgtgcagcgaagacctcgaagtcttgctgcgcctgaccggcagcttgccggtt
ccgctgtttgatacccaattggcagccgcgtacctcaatctcggtttttccatgggctat
tcgcgtctggtgcaggaggtccttaatatcgacctgccaaagggcgaaacccgttccgac
tggctgcaacgcccgctgtcggacacccagatcagctacgccgccgaagatgccgtgcac
cttgccgagctgttcgccatcctgcgtccgcgtttgtcagacgacaaatatgcctggttg
ctggatgacggtgccgagctggtcgccaacctgcgtcgtgaagtcgacccgtacgaggtg
tatcgcgacgccaagctggcctggaaactctcccgtgcccaattggcggtgctgcgtgag
ctctgcgcctggcgcgaggttcaggcccgtgcccgtaatttgccgcgcaaccgcattgtg
cgtgagcactcgctctggccattggccaaaacgcagcccgacaaccttggcgcgctggcc
cgtatcgaagacatgcacccgcgcacggtccgtcacgacggcgagtttttgctggaactg
attcagaccgcggccaatgtgccggcagcagagtggccgccggcattgcccgagcctttg
cccattgatgcggccgggtcgatcaaacgcctgcgcgcaatcggtcagcagtacgccgag
caactggacatgacgccagagctgatgctgcgcaagaagaccctcgaagccttgctcaag
agcggctaccccgacggtccctaccaattgcccgattcgctgcgtggctggcgtcgcgaa
ttgatgggccaggcgctgctggacagcctggcgtcctctggagaagagtcttga
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