Pseudomonas avellanae: BKM03_10230
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Entry
BKM03_10230 CDS
T05369
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pavl
Pseudomonas avellanae
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_10230
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM03_10230
Archaeal homologous recombinant proteins
BKM03_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
nSTAND3
MMR_HSR1
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AVB19583
UniProt:
A0A6H3CSK7
LinkDB
All DBs
Position
complement(2038540..2042184)
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAT
KKLQASRQTLTDLDSEQILSNQSKREFEQLIESRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEEALKTLTAQASNIVPLGPEQLAELEQRF
SDAQQHLKAHQAQQRQLELKQQWLTELHRLRDEQLAAQEALNSAQQTSDQQSGERQTLGQ
LERLGPQRHRFARRTTLNVQLDPLAEQIRQHQAQHTSLQGQQQQLETRRAQAHTSLLDAQ
QQHGNAKPLLQQAFDAQNTLNHLAQELTKARDQHQYTGQLCAEGQASLQTLLDQQQQVAQ
RLERIAEQLQRSGELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPALQQRAGVADQQL
SEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEELTRLWASQQDLDRQLA
DLTQQQQSAQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQRLARSASVEELRVQLQ
DDQPCPVCGSVEHPWHQPEALLESLTQHDDNEQASAQKAVDLLTEQRNQLREQVGGVIAR
QKELLRQHEQLLERHQALAPDLEAHPLAAQLLDRDADKRDGWLSQQLSQLNEVIARDEQR
QQALLTLQKDAARLQQQLQAATDASQTAARHVAEQLKQLDADQQRLEEEMTAFTPLVSPQ
VLEGLRSDASATVMQLEQQITQRLDQLEQQAEEQQEQRERQQNIEKQQVEQQARLQRQSE
LALEATRLDAQQQASQQALTGLLGEHATAEQWQQALENAIEQARHTESSAAEALQQIQSR
LIQLAGELKSGQQQQHAIQQELAELDVQISEWRSQHPELDDAALDTLLTYDDAHVDQLRQ
QLQATEKNLEQAKVLLQERDQRLQQHQAQHTDLSDNDQLIADLQTAQEQLAQSEQQCAEL
RAELSEDQRRRNANSELQTRIADANSEYLRWARLASLIGSAEGDKFRKIAQAYNLDLLVH
HANAQLKQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIRV
RRQGNGLSTIEVGN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcttgccattcgcctgaaaaacctggcctcgctggccgggccgtttgaaatc
gatttcaccgctgaaccgctggccagtgccggcttgttcgcgatcaccgggcctaccggc
gcgggcaaaagcaccttgctcgacgccttgtgcctggcgctgttcggggccattccacgg
ctgagcaatatcggtcagtccaaggtccctgatatcgatggcgacatcaccaccagtgac
ccacgcaccctgctgcgccgtggcaccggaagtggttacgccgaggtggatttcatcggt
atcgatcagcgtcgctatcgggcccgctgggaaaccaatcgcgcacgggacaacgccacc
aagaagctgcaggctagccgccagacgctcaccgatctggacagcgagcaaatcctcagc
aaccagagcaagcgagaattcgagcaactgatcgaaagccgtctgggcttgaatttcgag
cagttcacccgcgccgtgatgctcgcccagagcgagttcagcgccttcctcaaggctgac
gacaaggagcgtagcgagctgctggaaaagctgaccaacactgcgatctacagccagttg
ggtcggcgcgcctacagcaagagcaaggaagccgaagaagcgctgaaaaccctcaccgcc
caggccagcaacatcgtcccgctgggcccggagcaactggccgagctggaacagcgcttc
agcgacgcgcagcaacacctcaaagcccatcaagcacaacagcggcagctggaactcaag
caacagtggctgaccgagctgcatcgtctgcgtgacgaacagctcgccgcgcaggaagcg
ctgaacagtgcgcaacagacctcggaccagcaaagcggcgaacggcaaactctcggccaa
ctggagcgtctgggcccgcaacgccatcgctttgcccgccggactaccttgaacgtccag
ctcgacccgctggccgagcagattcgtcagcatcaggctcaacacacctcgctgcagggc
cagcaacaacagctggaaacccgccgcgctcaggcgcacaccagcctgctggacgcgcag
cagcaacacggcaacgccaaaccgctgttgcaacaggcgtttgatgcccagaacaccctc
aatcacctggcccaggaactgaccaaggcccgcgaccagcatcagtacaccgggcagttg
tgtgctgaaggtcaggccagcctgcaaaccctgctcgaccagcagcaacaggttgcgcag
cgccttgaacggattgccgaacaactgcaacgcagcggcgagctggccccgctggctcag
gcctggaacgcctggcgcgaccgcctgaaatccctgacgctgatcgccaaccgcctcaag
cacgggcacagtgaactgccagcgctgcaacaacgcgcaggcgtcgccgaccagcagttg
agcgagcagcgcagcgcgctggaattgctctatcgcgaagccgactgcgaagtcgaggct
gtgaccgagcaggtgcagattcttggcagcctgttgcaagacaaccgtaaacagcagcgc
gcgtttgaggaactgactcgcctgtgggccagccagcaggacctcgaccgccagcttgct
gatctgacccagcaacagcaaagcgctcagcagcaacgcgaacagctcaacagcgaaggc
ctgcgggttcgtgacgaactgaccgtcgccgagcagaccctgacggtcacccggcaactg
ctggaacgccagcgcctggcccgcagcgccagtgtcgaagaactgcgcgtgcagttgcag
gacgaccaaccctgcccggtctgcggcagcgtcgagcatccgtggcatcagcccgaagcg
ttgcttgaaagcctcacacagcatgacgacaacgagcaggccagcgcgcagaaggcggta
gacctgctgaccgagcagcgcaatcagttgcgtgaacaggtgggtggcgtgatcgcccgc
cagaaagaactgctgcgccagcacgagcagctgcttgagcgtcatcaggcattggcgccc
gaccttgaagcccatcccctcgccgctcaattgctggaccgcgacgccgataaacgcgac
ggctggctgagccagcaactgagccagttgaacgaagtcatcgcccgtgacgagcagcgt
cagcaggctttgctgaccttgcagaaagacgcagcccgtttgcagcaacagctccaggcc
gcaaccgatgccagccagaccgctgcgcgccatgttgccgagcaactcaagcaactggac
gccgatcaacagcgcctggaagaagaaatgacggcgttcacaccgctggtctcgccgcag
gtgcttgaaggcctgcgcagcgacgcatcggcaacagtgatgcagcttgaacagcaaatc
acccagcgtctggaccagcttgagcaacaggctgaagaacagcaggaacagcgcgaacgc
cagcagaacattgaaaaacagcaggtcgaacagcaggcgcgcctgcaacgtcagagcgaa
ttggcgcttgaagccacgcggctcgacgcgcagcaacaggccagccagcaggcactgacc
ggtctgctgggcgagcatgccacggccgagcaatggcagcaggcgctggagaacgccatc
gagcaggccaggcacaccgaaagctcggccgccgaggccttgcagcagattcaaagccgg
ttgatccagctggctggcgaactcaagtccggccagcaacagcagcacgccatacagcaa
gagttggccgaactcgacgtgcagatcagtgaatggcgcagtcagcacccggagctggac
gatgccgcgctcgacacgctgctgacctacgatgacgcacacgtcgatcagcttcgccag
caattgcaggcaaccgagaagaacctggagcaggcgaaagtattgctgcaggaacgggat
cagcgcctgcaacagcatcaggcgcagcacaccgacctgagcgacaacgatcaactgatt
gccgacctgcaaacggctcaggagcaactggcgcagagtgagcagcagtgcgccgaactg
cgcgctgaactcagcgaagatcagcgccgccgcaacgccaacagcgagctgcagacgcgt
atcgccgatgccaacagcgaatacctgcgctgggcacgcctggcgtcactgatcggttca
gctgaaggtgacaaattccgcaagatcgctcaggcctacaacctcgacctgctggtgcat
cacgccaatgcgcaactcaagcaactggtgcgccgctaccgcctgaaacgcggcggcagc
atgctcggcctgctggtgatggacaccgaaatgggcgatgaactgcgctcggtgcattcg
ctgtcgggcggggaaacctttctggtctcgctggcgctggctctgggcctggcgtcgatg
gcctccagcacgctgcgtatcgaatcgctgttcatcgacgaaggcttcggcagcctcgac
ccggagtcgctgcaactggccatggacgcactggacggcttgcaggcacagggccgcaaa
gtcggcgttatctctcacgtacaggaaatgcatgagcgaattccggtacagatcagagtg
cgcaggcagggtaacgggctgagcacgatcgaggtgggtaactga
DBGET
integrated database retrieval system
