Pseudomonas avellanae: BKM03_10235
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Entry
BKM03_10235 CDS
T05369
Name
(GenBank) exonuclease sbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pavl
Pseudomonas avellanae
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_10235
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM03_10235
Archaeal homologous recombinant proteins
BKM03_10235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
AVB19584
UniProt:
A0A6H3CPT8
LinkDB
All DBs
Position
complement(2042181..2043425)
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AA seq
414 aa
AA seq
DB search
MRLFHTSDWHLGQNLHGQERDFEHACFLTWLLARLGERQPDVLLIAGDIFDTVNPPVKAQ
ERLYDFIVNAHEQQPLLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVMWLNDGVLDA
ERLLLPLPDANGDIKAWCLALPFLRPSEVTGPTLGDDYLRGIGRVHELLIEAANLKRQPG
QALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFGPSITYVALGHLHKPQRVNGEER
IRYSGSPIPLSFSEIGYQHQILEINCDGDTLTSVEPCLIPRAVNLQRLGPAPLADLLVQL
KALPDIDLLADPDRQPWLEVRVRLDEPQPDLRNQIETSLQGKAVRLVRIGAEYAGKGSAD
GSDGEAGLIELDQLTPQELFSRAWQDNFGSEVDEQTLTDFATLLREVQQESEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttcacacctccgactggcatttgggtcagaacctgcatggtcaggaacgg
gacttcgaacatgcctgctttctgacctggctgctggcccgtctgggcgaacgacagcct
gatgtgctgctgattgcgggcgacatcttcgacaccgtcaacccgccggtcaaagcccag
gaacggctgtacgacttcatcgtcaacgcccacgagcaacagccgctgctgaccatcgtg
atgattgccggcaaccatgattccggatcgcgcatcgaactgcctgcgccgctgatgcgc
cgtctgcgcacccatgcgctgggcagggtgatgtggctgaacgacggcgtgctggatgcc
gaacgtctgctgctgccgttgccggatgccaatggcgacatcaaggcctggtgcctggcg
ctgcccttcctgcgcccctctgaagtcaccggcccgaccctgggtgatgactacctgcgc
ggcattggccgggtacatgaactgctgattgaagcggccaatctcaagcgccagccaggc
caggcactgatcgccatcagccatgcacacatggcgggcggctcggtctcggaagactcc
gaacgcagcctgatcatcggcaacgccgaagccctgcccgccagcctgttcgggccgagc
atcacctacgtcgccctcggccatctgcacaagccgcagcgggtcaatggtgaagagcgc
attcgctacagtggctcgccgatcccgctgtccttttcggaaatcggctaccagcaccag
attctcgagatcaattgcgacggcgacacgctgaccagcgtcgagccctgcctgatcccg
cgcgccgtcaacctgcaacgcctcgggcctgcaccattggctgatttgctggtgcagctc
aaggcactgccggacatcgacctgctcgccgacccggaccgccagccgtggctggaagtg
cgcgtgcgtctggatgagccgcaaccggacctgcgcaaccagatcgaaacctcgctacaa
ggcaaagccgtacggctggtgcgcatcggtgccgaatacgccggcaaaggcagcgccgat
ggcagcgatggcgaggccgggctgatcgaactggaccagctcaccccacaggaattgttc
agccgtgcctggcaggacaacttcggcagcgaggtggacgaacagaccctgaccgatttc
gccacgctgctgcgcgaagttcagcaggagagcgaacagccatga
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