Pseudomonas avellanae: BKM03_20865
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Entry
BKM03_20865 CDS
T05369
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_20865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_20865
03009 Ribosome biogenesis [BR:
pavl03009
]
BKM03_20865
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM03_20865
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM03_20865
Ribosome biogenesis [BR:
pavl03009
]
Prokaryotic type
rRNA helicases
BKM03_20865
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AVB21397
UniProt:
A0A261WFI0
LinkDB
All DBs
Position
complement(4364848..4366536)
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AA seq
562 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPTKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNNAPRGDRPERSGSSDRGDRGDRPERERRAPVP
LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL
LTKLKDTRVAGKQLKLRRYRED
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatccaaatatcgttgcagct
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgatcatt
cttgccggtcacgacatgattggtcaggcgcagaccggtacgggtaaaaccgccgcgttc
gcactgcctatcctgcatcgcatcgatccgaccaagcgtgagccgcaagcactgattctg
gccccgacccgcgagctggcccttcaggttgccaccgcgttcgagacctacgccaaacaa
atgccgggcgtgactgttgttgcagtctacggcggcgcgccgatgggccctcagctcaag
gccatccgcaacggcgcacagatcgttgtcgccaccccgggccgtctctgcgaccacctg
cgtcgtgatgagaaagtcctggcgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgcctgaaacc
cgtcagaccgtactgttctcggccactctgccacagtcgatccgtgccatcgccgaacgc
catctgcgcgatccgaagcacgtgaaaattcagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggac
ctggcaagcgcccttgaagccaaaggctacaaggctgctgcactgaacggtgacatcgcc
cagaaccagcgcgagcgcgttatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggtcttgacgttccgcgtatcacccacgtattcaacgtg
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcaggt
cgcgaaggccgtgcattgctgctggtcactcctcgcgagcgccgcatgctgcaagtgatc
gagcgtgtgaccggtcagaaggttgcggaagtccgcctgccggatgcccaagccgttctg
gatgcgcgcatcaagaaactgaccaacagcctcgcgccgctggttgccgatgccgaatcg
actcatggcgaccttctggatcgtctgactgccgacatcggttgcagcccgcgtgccctc
gctgctgcactgctgcgcaaggctaccaatggtcaggctctgaccctggcagccatcgag
cgtgatcgtccgctggttccgaacaacgcgcctcgcggtgatcgtcctgagcgtagcggt
agcagcgatcgtggtgaccgtggcgatcgtcctgagcgtgagcgtcgtgcgccggttcca
ttggccgaaggtcgtgctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgcc
aagaacctgctgggtgcaatccttaacgaaggcggcctggcccgcgaagcgatcggccgt
atccaggtccgtgacagcttcagcctggtcgaactgccggaagatggccttgagcgtctg
ctgaccaaactcaaggacacccgtgttgcaggcaagcaactcaagctgcgtcgctatcgc
gaagactga
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