Pseudomonas avellanae: BKM03_21570
Help
Entry
BKM03_21570 CDS
T05369
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_21570 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_21570 (recQ)
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_21570 (recQ)
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM03_21570 (recQ)
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM03_21570 (recQ)
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKM03_21570 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
HTH_23
HTH_29
GerE
Sigma70_r4_2
DnaD_N
Motif
Other DBs
NCBI-ProteinID:
AVB21512
UniProt:
A0AAD0E092
LinkDB
All DBs
Position
complement(4502486..4504615)
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPGLLRDGLC
VVVSPLIALMDDQVATLDELGVSAAALNSTLNAEQQRELANRIRLGEVKMLYLAPERLVQ
PRMLSFLQNLKIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPDVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAVFLSENGYPALPYHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHK
LDAMLALCEETRCRRQTLLAYFDEDMPNPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKSNDKVQSFGHQHLSVFGVGKARTEAEWRSLFRQLVARGLADIDLE
GYGGLRLSDTCRPLLRGEVSLELRRDLKPQTTSRSSSGSPASQLVRGEEREQWEALRALR
RKLAEEHGVPPYVIFPDSTLLEMLRSKPGSMAEMAKVSGVGARKLERYGEAFLEVLSGKA
EAPQVVADIRHELISLARAGMTPTQIAGQLRCSEKNVYTLLAEAIGKQQLSIEQALDLPE
DLLGEVHDAFLDGEGELPPVAAIAEQFAGRVPEGVLYCVRAALQSEFEV
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagcaggcacaacgcgtacttaaagacatctttggttacgacagctttcgtggt
cgccagggtgccattattgagcgtgtagccaacggcggcgatgctctggtgctgatgccg
accggtggcggcaagtccctgtgttttcaggtgcccgggctgttgcgggacggtctctgc
gtggtcgtttcgccgcttatcgcgctgatggacgatcaggttgccacgctcgatgagctg
ggtgtttccgccgcggcgctcaattccaccctcaacgccgagcagcagcgcgagctggcc
aaccgtatccgtctgggcgaagtgaaaatgctgtacctcgccccggagcgcctggttcag
ccgcgcatgctgtcatttctgcaaaacctgaagatcgccctgtttgccatcgacgaagcg
cattgcgtgtcgcaatggggccatgacttccgcccggaatacctgcaactggggcagctg
gccgaactgtttcctgatgtgccgcgcatcgccctgaccgccacggcagacaagcgtacc
cgcgaagaaatcgtcacgcgcctgcacctgcagaacgccgaacgcttcctgtccagcttc
gaccgaccaaacatcttctaccgcatcgtgcccaaggaacagccgcgcaaacaactgctg
gcgttcctgtccgagcggcgcagcgatgccggtatcgtctactgcctgtcgcgcaagaag
gtcgatgaagtggccgtattcctcagtgaaaacggttatccggcgctgccgtatcacgcc
gggttgccatcggaaacccgcgccgccaaccagaaacgcttcctcaacgaggaaggcctg
atcatggtcgcgaccatcgcgttcggcatgggcatcgacaaacccaacgtgcgcttcgtt
gcgcacatggacctgcccaaatcgctggaggcctactatcaggaaaccggccgggcaggg
cgcgacggcttgcccgccgatgcctggatggcctacggcctgcaagacgtgctgatgctc
aagcagatgttgcagaactccgaaggcgacgagcgccacaagcgcctggagcagcacaag
ctcgatgccatgctggccctgtgcgaagaaacccgctgccgccgtcagacccttctggcc
tatttcgatgaagacatgcccaacccgtgcgggcattgcgacaactgtgtcgatggcgtg
caaacctgggacgccaccgagcctgcgcgccaggcgctgtcggccatctaccgcaccggt
cagcgctatggcgtcggtcatctggtcgatgtactgctcggcaaatccaacgacaaggtc
caaagcttcggtcatcagcacctgtcggtgttcggtgtcggcaaagcgcgcaccgaagcg
gagtggcgttcgctgttccgccaactggtcgcgcgcggcctcgccgacatcgaccttgaa
ggctacggcggcctgcgcctgagcgacacctgccgcccgttgctgcgtggcgaggtttct
ctggaactgcgccgcgacctcaaaccacaaaccacttctagaagcagttccggcagcccg
gccagccaactggtgcgtggcgaagagcgcgagcaatgggaagccctgcgtgccctgcgc
cgcaagctggccgaagagcacggcgtgccgccttatgtgattttcccggattcgaccctg
ctggaaatgctgcgcagcaaaccgggctcgatggccgagatggccaaagtgagtggcgtg
ggtgcgcgcaaactggagcgttacggcgaggccttccttgaagtgctcagcggcaaggcc
gaggcaccgcaagtggtcgccgacattcgccacgagctgatcagcctggcgcgtgcgggc
atgaccccgacacagatcgccggccagttgcggtgctcggaaaagaatgtctacacccta
ctggccgaggccatcggcaagcagcagttgtccatcgagcaggcgctcgatttgccggaa
gacctgttgggtgaggtgcatgacgcctttctcgacggcgaaggcgagctgccaccggtc
gcggcgattgccgagcaatttgccggtcgcgtgccggagggcgtgctgtattgcgtacgt
gcggcgctgcagtcggaatttgaagtataa
DBGET
integrated database retrieval system
