Pseudomonas avellanae: BKM03_21880
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Entry
BKM03_21880 CDS
T05369
Name
(GenBank) ATP-dependent helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pavl
Pseudomonas avellanae
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pavl03009
]
BKM03_21880
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM03_21880
Ribosome biogenesis [BR:
pavl03009
]
Prokaryotic type
rRNA helicases
BKM03_21880
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVB21565
UniProt:
A0A261WBT1
LinkDB
All DBs
Position
complement(4563071..4564408)
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AA seq
445 aa
AA seq
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MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM
LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN
ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT
DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER
YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDVKGDKKKVAAKGPTKRKTVNR
PKSDLVSQDGMAPLKKRSTPAPAAE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgaattcgccctgcacgaacgcctgcttaaagctgtggccgagcttaaattt
gtcgagcctacgcccgtgcaggcggccgccatcccgctcgcactgcaagggcgcgacctg
cgggtgactgcgcaaaccggtagtggcaagacagccgcctttgtgttgccgatcctcaac
cgcctgatcggcccagccaaggttcgcgttgatattcgcgcggtgatcctgctgccgacc
cgtgagctggctcagcagaccctcaaggaagtcgagcggttttcccagttcaccttcgtc
aaggccggtttgatcaccggtggtgaggacttcaaggtccaggcagccatgctgcgcaag
gttccggacatcctcatcggcacgccgggtcgtctgctggagcagctcaacgctggcaac
ctcgacctcaagcacgttgaagtgctggtgctggacgaagccgaccgcatgctcgacatg
ggcttctccgaagacgtcgaacgtctggcaggcgaatgcgccggccgcgagcagaccatg
ctgttctccgcaactaccggcggtgctggcctgcgggaaatgatcggcaaggtgctcaag
gatccacagcatctgcaagtgaacagcgtcagcgaactggcttccggcacacgccaccag
atcatcactgctgaccacaacgtgcacaaagagcaggtgttgaactggctgctggccaac
gagacctaccagaaagccattatcttcaccaacaccaaagccatggccgaccgcctgtat
ggccgtctggttgcgctggaatacaaagcgttcgtgctgcacggcgacaaggaccagaag
gaccgcaaggccgccatcgaccgcctgaagcagggcggggcgaagatcatggtcgcgacc
gatgtagcggctcgcggtcttgatgttgaaggcctggacatggtgatcaacttcgacatg
ccacgcagcggcgacgattacgtccaccgcgtcggtcgtaccggccgtgcgggcagcgac
ggtctggcgatctcgctgatctgtcatggcgactggaacctgatgtcgagcgtcgagcgc
tacctcaagcagagcttcgagcgtcgcgtcatcaaggaagtcaaaggcacctacggcggg
ccgaagaaggtcaaggcgtcgggcaaggcggtaggcgtcaagaagaaaaagaccgacgtg
aagggcgacaagaagaaagtagcggcaaaaggccctaccaagcgcaagacggtcaaccgt
cccaagtctgatctggtcagccaggacggcatggcacccctgaaaaaacgcagcaccccg
gcccctgctgccgagtga
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