Pseudomonas avellanae: BKM03_22975
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Entry
BKM03_22975 CDS
T05369
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BKM03_22975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_22975
Enzymes [BR:
pavl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
BKM03_22975
DNA repair and recombination proteins [BR:
pavl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BKM03_22975
Prokaryotic type
BKM03_22975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AVB21743
UniProt:
A0A261WFB8
LinkDB
All DBs
Position
complement(4789359..4790051)
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AA seq
230 aa
AA seq
DB search
MTSDDRIKLEPSWKEALRDEFEQPYMAQLREFLRQEHAAGKEIYPPGPLIFNALNSTPLD
NVKVVILGQDPYHGPNQAHGLCFSVQPGVPTPPSLVNIYKELKRDLNIDIPNHGCLQSWA
DQGVLMLNTTLTVERANAASHAGKGWQHFTDRIIQVVSEHQPHLVFLLWGAHAQGKQKLV
DATKHLVLTSVHPSPLSAYKGFLGNGHFGRANKYLEQNGLAPIDWRLPAL
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgactagcgatgaccgcatcaagcttgagccaagctggaaagaagccctgcgtgacgaa
ttcgagcagccctacatggcgcagttgcgcgagtttctgcgtcaggagcatgccgctggc
aaggaaatctatccgccggggccgctgattttcaatgcgctgaactccacgccgctggac
aacgtaaaagtcgtcattctcggccaggacccttaccacggccctaaccaggcccacggc
ttgtgcttctcggtgcagccaggcgtgccgacgccgccttcgctggtcaacatctataaa
gagctgaaacgcgacctgaacatcgatatcccgaaccacggttgcctgcaatcctgggct
gatcagggcgtgctgatgctcaataccaccctgacggtcgagcgcgccaatgctgcgtct
catgcggggaagggctggcagcattttaccgaccggatcattcaggtggtcagcgagcat
cagccgcatctggtgtttttgctgtggggcgctcatgcgcaaggcaagcagaagctggtc
gatgcgaccaagcacctggtgctgacctcggtccatccgtcgccgctgtcggcgtataaa
ggctttttaggcaacgggcacttcgggcgtgccaacaagtaccttgagcagaacggcctg
gcacccattgactggcgattgcctgcgctctga
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