KEGG   Pseudomonas avellanae: BKM03_23380
Entry
BKM03_23380       CDS       T05369                                 
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
pavl  Pseudomonas avellanae
Pathway
pavl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pavl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    BKM03_23380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pavl03400]
    BKM03_23380
Enzymes [BR:pavl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     BKM03_23380
DNA repair and recombination proteins [BR:pavl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     BKM03_23380
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BKM03_23380
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BKM03_23380
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AVB21811
UniProt: A0AAD0E184
LinkDB
Position
complement(4877259..4878689)
AA seq 476 aa
MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI
TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR
EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQDGRVTLKLERLTAANGIDHGQAHDALSDV
RATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHLMKPLVHISGRFSAARSYLGVVVPL
AWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRCPV
IAPLGVLRSEDQQRLKLDMAGYQARAAQLSENREVWQDKLQVLYGKDDFVASEDPEQQLY
DGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAEEQHRWQ
DFCRQRLSSPEWGAPTTLQDFTSALTECSLSATPEQLEVLRQWQDHALQLSKRLGL
NT seq 1431 nt   +upstreamnt  +downstreamnt
gtgacttccagcattttctggtacgactacgaaaccaccggtatcaacccgcgtaacgat
cgagcgctacagatggcgggaattcgcaccgatgccgagctcaatgaaatcgcgcctccg
gtcaatctttactgccagcccagcgacgacattctgccccatcccgcagcctgtgtgatc
accggcataacccctgccacgctggcagaaaagggcttgtgcgaggcggacttcatgact
cgcgtgcacgccgagcttgctgcgcccggtacgtgcggtgccggctacaacacgttgcgt
ttcgacgacgaagtcacccgctacagtttttatcgcaactttttcgatccttatgcgcgc
gagtggcagggcggtaacagtcgctgggacctgattgatgtagtgcgcgcggcctacgca
ttacgtcccgagggtattgtctggcccgaacaggacgggcgagtcacgctcaaactggag
cgcctgaccgccgccaacggtattgatcacgggcaggcccatgatgcgttatccgatgtg
cgtgcaactatcgctctggcgcgtctgattcgcgaaaaacagcccaggctttacgactac
ctgttcacgttgcgcaccaaacagaaagtccaggagcacattcacctgatgaaacctctg
gtgcatatttccggacggttttctgcggcacgcagttatctgggcgtggtagtgccgctg
gcgtggcatccgcataatcgcaatgcgctgatcgtctgtgatctgcacctggatcattcc
ccgttgttgcagtgcgatgctgaaacgctcaagcagcgcttatatacccggcttgacgca
ctgaaggaaggcgaattgccggtaccgctcaaactattgcatataaaccggtgcccggtg
atcgcgcccttgggcgtactgcgcagcgaagatcagcagcgtctgaaactggacatggca
ggctatcaggcgcgcgcagcgcagttgagtgaaaaccgcgaagtttggcaggataaattg
caggttctgtacggcaaggatgacttcgttgcaagtgaagatcccgagcaacagttatat
gatggctttatcggtgaccgcgatcgccggttgtgcgagcaagttcgacaggccgagcca
gaacagttggcccgtgacgcatggccgtttgatgatgctcgcttgcccgatttgttattc
aggtatcgcgctcgcaactttcccgagaccttgagcgccgaggagcaacatcgttggcag
gatttctgtcggcagcgcctgagcagcccggaatggggggcgcccactaccttgcaggat
tttaccagcgcgctgactgaatgctcgcttagtgccactccagagcagttggaggtgttg
cggcaatggcaggatcatgcccttcaattgagtaaacgcctgggtttataa

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