Pseudomonas avellanae: BKM03_25070
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Entry
BKM03_25070 CDS
T05369
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03030
DNA replication
pavl03430
Mismatch repair
pavl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BKM03_25070
03430 Mismatch repair
BKM03_25070
03440 Homologous recombination
BKM03_25070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pavl03032
]
BKM03_25070
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_25070
Enzymes [BR:
pavl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BKM03_25070
DNA replication proteins [BR:
pavl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BKM03_25070
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BKM03_25070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AVB22105
UniProt:
A0A3M5T3G2
LinkDB
All DBs
Position
complement(5219816..5220430)
Genome browser
AA seq
204 aa
AA seq
DB search
MLERVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGI
SNNMIRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQSFACSMLL
ARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNTHGIAGISH
QMLCSLQKVPAAKIGETLKRQRGF
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
gtgttggaacgtgttgcagtcatcgactttgaaaccaccggaatctctccgaatccgggt
tgccgggcgaccgagattgccgtggtcatcatggagcaggggcgtatcgtcgagcgcttt
cagagcctgatgaacgctggcgtgcgcattccggcattcatcgaagggctgaccggtatc
agcaacaacatgattcgcaccgcccccagcgccgagcgggtgatgggtgatgtggcagac
tttgtcggctcgacgccgctggtggcgcacaatgcctcgtttgaccagaagttctgggat
tacgaactgtcgcgcatccagcgcaagcgcgaacaaagctttgcctgttcgatgctgctg
gcccgacgcctgatgcccggcgccccgaatcacaagctcggcacattgaccagctacgca
cgcctgcccaacaccggcaaggctcaccgggcgatggccgatgctgaaatggctgccaac
ctgacggcgtacctgaccaacgaactgcgcaacacccacggtatcgccgggatctctcac
cagatgctgtgctcgctgcagaaagtcccggccgcaaaaatcggcgaaacgctcaagcgt
cagcgcggcttttga
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