KEGG   Pseudomonas avellanae: BKM03_26000
Entry
BKM03_26000       CDS       T05369                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pavl  Pseudomonas avellanae
Pathway
pavl02024  Quorum sensing
pavl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pavl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BKM03_26000
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BKM03_26000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pavl03019]
    BKM03_26000
   03036 Chromosome and associated proteins [BR:pavl03036]
    BKM03_26000
Messenger RNA biogenesis [BR:pavl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BKM03_26000
Chromosome and associated proteins [BR:pavl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BKM03_26000
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AVB22266
UniProt: A0A261WJ95
LinkDB
Position
complement(5411483..5411743)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATDADGADAEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaacaccttgcgaaaggagaaggtc
ggcgtctcgatctacctggtcaacggtatcaagctgcagggaacgatcgagtctttcgac
cagttcgtcattttgctgaaaaacactgtcagccagatggtctacaaacacgccatttcc
accgtcgtaccggttcgcccgattcgcctgcctagcgctaccgacgctgacggcgctgac
gccgagccaggtaacgcctga

DBGET integrated database retrieval system