Pseudomonas avellanae: BKM03_26000
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Entry
BKM03_26000 CDS
T05369
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
pavl
Pseudomonas avellanae
Pathway
pavl02024
Quorum sensing
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_26000
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BKM03_26000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_26000
03036 Chromosome and associated proteins [BR:
pavl03036
]
BKM03_26000
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BKM03_26000
Chromosome and associated proteins [BR:
pavl03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BKM03_26000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AVB22266
UniProt:
A0A261WJ95
LinkDB
All DBs
Position
complement(5411483..5411743)
Genome browser
AA seq
86 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
TVVPVRPIRLPSATDADGADAEPGNA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttacttgaacaccttgcgaaaggagaaggtc
ggcgtctcgatctacctggtcaacggtatcaagctgcagggaacgatcgagtctttcgac
cagttcgtcattttgctgaaaaacactgtcagccagatggtctacaaacacgccatttcc
accgtcgtaccggttcgcccgattcgcctgcctagcgctaccgacgctgacggcgctgac
gccgagccaggtaacgcctga
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