Pseudomonas avellanae: BKM03_26045
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Entry
BKM03_26045 CDS
T05369
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
BKM03_26045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_26045
03009 Ribosome biogenesis [BR:
pavl03009
]
BKM03_26045
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKM03_26045
Ribosome biogenesis [BR:
pavl03009
]
Eukaryotic type
Pre-60S particles
RNases
BKM03_26045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DHOR
Motif
Other DBs
NCBI-ProteinID:
AVB22275
UniProt:
A0AAD0M4X0
LinkDB
All DBs
Position
complement(5420525..5421061)
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AA seq
178 aa
AA seq
DB search
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEW
NTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMS
ALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRFYREHFIKP
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacaagcagaacctgatctggatcgatctggaaatgaccggtctggaccctgat
accgatgtcatcatcgaaatggccacaatcatcacggacagcgagctgaacaccctggct
gaagggccggtgatcgccgtgcaccagagcgatgagacgctggcaaaaatggatgagtgg
aacactcgccagcacggcggctcgggcctgacccagcgtgtgcgcgaaagtaccatcagc
atggccgaagccgaggcgcagactcttgagttcatcaagctgtgggtgccggagcgcagt
tcgccgatctgtggcaacagcatctgccaggaccgccgctttttgtatcgccacatgtcg
gcactggaaaactacttccactaccgcaacctggacgtctcgaccctcaaggagctggcc
gcacgctgggctcccgagcttaaattcaagaaaggcagcacgcacctggcgctggacgac
attcgcgagtcgatcgccgagttgcgcttctatcgtgagcacttcatcaagccttga
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