Pseudomonas avellanae: BKM03_28695
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Entry
BKM03_28695 CDS
T05369
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_28695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_28695
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_28695
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM03_28695
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM03_28695
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKM03_28695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
PorA
Motif
Other DBs
NCBI-ProteinID:
AVB22757
UniProt:
A0AAD0M6N2
LinkDB
All DBs
Position
complement(5978103..5980031)
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AA seq
642 aa
AA seq
DB search
MHQRLEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVS
PLLALIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFR
NFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQALLLTATATPQVIIDM
QDKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRRRLVEWLNERQGQPTIVYVTLQKTAE
YIAAHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIARVLEDLL
GARNDGQWEFLLGPLGDLGNIRQLPLKTLLVQLELRGLIASRYSYFAEYRFKFMLQSHDL
IARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYFQEKGWIELE
SKQTTEVYSLLRSDFDPQALSTELHDYFAHHEATEVARIHAMLEVFSSDRCLTHRLARYF
GDDNAPAQCGHCSVCHGQIAHLPEPPELEPLQSRDFQQLCGEFIHKHRDYTGQPPSAECL
TRFLCGISVPLFTKLKARATSGFAVLEDYPYAQVRAWVQGML
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcgtctcgagcaggtttttggttacacgcagttccggccgggccaggaggct
gcaatcagtgccgtgctggccgggcgctcggctgcggcgatctttccgaccggctcaggc
aagtcgctatgttaccaattgcctgcgttgatgttgccgcatttgacgctggtggtttca
ccattgctggcgctgattcaggatcagcttgcctttctgcatcggcatggcatttcggcg
gcgagcatcgattcggcgcagagccgggatgatgtcgcggacgtcatggccagggcgcgc
tccggggagctgaaaatcctgatgatctcggtcgaacggctcaagaatgagcgcttccgt
aacttcatcgctcaggtgccgatttcgctgttggttgtcgatgaagcgcactgtatctcg
gagtgggggcacaactttcggcccgactacctcaagctgccggactaccagcgcgaattc
aacatccctcaagccctgctgctgacggcgaccgcaacgccgcaggtcattatcgacatg
caggacaagtttgccattgccccggaagatgtgatcaccaccggtttctaccgcgccaat
ctgcacctgtgggtcgagccggtcagcgggcgtgacaagaggcggcgcctggtcgagtgg
ctcaatgagcggcaggggcagccgacgattgtttacgtgaccctgcaaaaaaccgccgaa
tacattgccgcgcacctcgaacagaacggtctgcctgccagcgcctaccacgccgggctg
cccaacgatcagcgcgagtccatccagaagcgtttcatgggcggcagcctcaattgcatc
gtggcaaccatcgcgttcgggatgggcatcgacaagagcgacattcgcaacgtggtgcat
ttcgacctgcccaaatccatcgagaactacagccaggaaatcgggcgggcagggcgcgac
ggtgccgcttccgattgcctggtactggccaatcgcgacagcctcaacgtgctggaaaac
tttgtgtacggcgacacgccagagcgcgaggggattgcgcgtgtgctggaagacctgctc
ggcgcgcgcaacgacggccaatgggagtttctgctcgggccgctgggcgatcttggcaac
attcgccaactgccgctgaaaacattgctggtgcaacttgagctgcgcgggctcatcgcg
tcacgttattcctacttcgccgagtaccgtttcaagttcatgctccagtcgcacgacctg
attgcacgctttgaaggcgagcggcgtgagttcgtccaggcgctgatcgacacctccagc
cgggcgcggacctgggcgacggtcaatttcgacgccatgtaccagcaatacggtgctgaa
cgtgggcgggtggtcaaggcgctggactactttcaggaaaagggctggatcgagcttgaa
agcaaacagacgaccgaggtgtacagcctgctgcgcagcgattttgacccgcaggcgctg
agcaccgagctgcacgactactttgcccaccacgaggccacggaagtggcgcgcattcat
gcaatgcttgaagtgttctccagcgatcggtgcctgactcatcggctggcacgctacttc
ggcgatgacaacgcgcccgcgcaatgcggccattgctcggtctgccacggccagatcgcc
cacctgcccgaaccgcccgagcttgaaccgctgcagagccgggactttcagcaactgtgt
ggcgagtttatccacaagcatcgggactacaccggccagcctcccagcgccgaatgcctg
acccgttttttgtgcggcatcagcgtaccgctgttcaccaaactcaaagcccgcgccacc
agtggttttgccgtgctggaggattatccgtatgcgcaggtcagggcgtgggtgcagggg
atgctctaa
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