Pseudomonas avellanae: BKM03_28725
Help
Entry
BKM03_28725 CDS
T05369
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pavl
Pseudomonas avellanae
Pathway
pavl02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
BKM03_28725 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pavl02044
]
BKM03_28725 (tssC)
Secretion system [BR:
pavl02044
]
Type VI secretion system
Imp/Vas secretion system core components
BKM03_28725 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
TssC
TSP_NTD
Motif
Other DBs
NCBI-ProteinID:
AVB22763
UniProt:
A0AAD0GT22
LinkDB
All DBs
Position
5985881..5987383
Genome browser
AA seq
500 aa
AA seq
DB search
MTDKQTVTQQDAALVEVENFAPQSSLLDSIISESRVARSETERTRTRDLIGELVAQVLEG
EMTPSKDLIAVLDARIAEIDAMLSEQMNEIMHAREFQQLEASWRGLKYQVDQTETSTTLK
IHLLNASKKDLVRDLKASSEFDQSALFKKIYEEEYGTFGGAPFGMLLGDYEFNRSPEDMY
LLEEISHVAAAAHAPFISAASAELFGWDSFTDMAGPRDLAKIFDTVEYAKWKSFRASEDS
RYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFSRY
GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCK
GTDYAAFFGTQSTQKQKHYNTDIANANARLSAQLQYIFATSRIAHYMKAIMRDKIGSFAS
RKDVELFLNKWLSSYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQ
LDELTASLRLVAELPQSTRG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataagcaaaccgtgactcagcaggacgccgctctggttgaagttgaaaacttc
gccccgcaatcctccctgctcgacagcatcatttccgaaagccgcgttgcgcgctccgaa
accgagcgtacccgtacccgcgacctgatcggcgaactcgtggcccaggtgctggaaggc
gagatgacgccgagcaaggacctgatcgccgtgctcgacgcacgtatcgccgaaatcgat
gcgatgctctccgagcagatgaacgagatcatgcacgctcgtgagttccagcagctggag
gcctcctggcgcggcctgaaatatcaggttgaccagaccgagaccagcaccacgctgaag
attcacttgctcaacgcatcgaagaaagacctggtccgcgacctcaaggcctcgtccgaa
ttcgaccagagcgcgctgttcaagaagatctacgaagaagagtacggcaccttcggtggt
gcgccgttcggcatgttgctgggtgactacgagttcaaccgcagcccggaagacatgtac
ctgctcgaagagatctcccacgttgcagccgccgcccacgcgccgttcatttcggcagca
tcggctgaactgttcggctgggactcgttcaccgacatggccggcccgcgcgacctggcg
aagatcttcgacaccgtcgaatacgccaagtggaagtcgttccgcgcctccgaagactcc
cgttacgttggcctgaccctgccgcacgtgctgggtcgcctgccttacggcccggatacc
acgccggtcgaagaattcaacttcgttgaaagcgtcgatggccgtgaccacaacaaatac
ctgtggatgaacgccgcctacgcactgggcactcgcgtgaccgacgcattctcccgctac
ggctggtgcgtggcgattcgcggtgtcgaaggcggtggtctggtcgaaggcctgccgact
cataccttcaagactgatgacggcgaaatcgcgctcaaatgcccgactgaaattgccatc
accgaccgtcgtgaaaaagagctgtcggacctgggattcattcctctggtgcactgcaaa
gggactgactacgccgcgttcttcggcacgcagtcgacccagaagcagaagcattacaac
accgacattgccaacgccaacgcccgtctttcggcgcaactgcagtacatcttcgcgacc
tcgcgtatcgctcactacatgaaagcgatcatgcgcgacaagatcggtagttttgcgtcc
cgtaaggacgtcgagctgttcctcaacaagtggctgtccagctacgtgttgctggatgac
accgccagtcaggaagccaaggccaagttcccgctgcgtgaagcgcgtgccgaagtcttc
gaagtacctggcaagcccggcgtctacaaggctgtgacttacctgcgtccgcactaccaa
ctggatgaactgaccgcttcgctgcgtctggtcgccgaattgccgcaatcaactcgcggc
taa
DBGET
integrated database retrieval system
