Pseudomonas avellanae: BKM03_29530
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Entry
BKM03_29530 CDS
T05369
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03420
Nucleotide excision repair
pavl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKM03_29530
03430 Mismatch repair
BKM03_29530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_29530
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM03_29530
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BKM03_29530
MMR (mismatch excision repair)
Other MMR factors
BKM03_29530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVB22886
UniProt:
A0AAD0GTA9
LinkDB
All DBs
Position
6164820..6167003
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSVLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDD
QQRLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYE
AACQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSDDFPDTEVIRLEQNYRSTASILKAANGLII
NNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLH
LMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLAAFLGHA
SLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVRLSNSVSRPFGGTP
KFNSGSLFNGTGIPETEFAMGQRVQHAVFGEGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLVAL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctgttcttcttaattccctcaacgatgcccaacgtcaggccgta
gccgcctcattgggtcgtcagttggtcctggccggtgctggctccggcaaaacccgagtg
ctggtgcaccgcatcgcctggctgatgcaggtcgagcaagcctccccgcattcggtcctg
tcggtgacgttcaccaacaaggcggctgccgagatgcgccaccgcatcgagcagctcatg
ggcatcagccctgcaggcatgtgggtgggcactttccacggcttggcgcaccgcctgctg
cgggcgcactggcaggaagccggattggtgcaaaccttccagattcttgatagcgatgat
cagcaacgtctggtcaagcgcgtgatgcgcgagctggggctggacgagcaacgctggcct
gcgcgtcaggcgcagtggttcatcaatggtcagaaagatgaaggcctgcgcccaaaacat
attcaggccagcggcgatctgttcctgaccaccatgaaaagcgtttacgaggcctacgag
gctgcctgccagcgagcgggcgtcatcgacttctccgagttgctgctgcgcgcgctggac
ctgtggcgtgacaaccccggcctgctggcgcactaccagcggcgcttccgccatgtgctg
gtggacgagttccaggacaccaacgccgtgcaatacgcatggctgcgcctgctggcacaa
ggcggcgacagcctgatggtggtcggcgacgacgatcagtccatctacggctggcgtggc
gcgaagatcgagaacatccatcagtactccgatgacttcccggacaccgaagtgatccgc
ctggagcagaactaccgctccacagcgagcatcctgaaggctgccaatggcttgatcatc
aacaacagcgggcgtctgggcaaggagctgtggaccgatgtcggcgatggcgagctgatc
aatctgtatgccgccttcaacgagcacgacgaagcgcgttacgtggtcgagaccatcgag
agcgctctgaaaaccggcatctcgcgcaacgacatcgccattctgtaccgctccaacgcc
cagtcacgggtgctggaagaagccctgctgcgtgagcgcattccgtaccgcatctatggc
ggacagcgcttcttcgaacgtgccgaaatcaagaacgccatggcctacatgcgcttgctg
gaaggccgtggcaacgatgcggcactggagcgggtgatcaacgttccggctcgcggcatc
ggcgaaaaaaccgtcgaagcgattcgcgagcatgcgcgtcatgccgacgtctcgatgtgg
gaagccatgcgcctgctggtcgccaacaagggcctcaccggccgcgctgctggcgcgctg
ggcgggttcatcgagctgatcgagaacctgtcggccaaagtcatggaaatgccgttgcac
ctgatgacccagacagtcatcgagcagtccgggctaattacctaccacgagcaggaaaaa
ggcgagaaaggccaggcccgggtagaaaaccttgaggaactggtcagcgccgctcgggct
ttcgaaaatcacgagagcgatgaagaactgaccccgctggcagccttcctcggccatgct
tcgctggaggctggcgatactcaggcgcaggaacacgaagacagcattcagttgatgacg
ctgcacagcgccaagggtctggaattcccccatgtgtttttggtgggtatggaagaaggg
ctgtttccgcacaagatgagccttgaagaaccgggccgtctggaagaagagcggcgcctg
gcctacgtcggcatcacccgcgccatgaaacagctggtgatgacctacgccgagacacgc
cgcctgtacggcagcgaaacctacaacaaggtttcgcgtttcgtgcgcgagattccgcct
gcgctgattcaggaagtccgtttgtccaacagcgtcagccgtccgttcggtggcactccg
aagttcaacagcggcagcctgttcaacggcaccggcattccggaaaccgagttcgccatg
ggccagcgcgtgcagcatgcggtgttcggcgaaggcgtgatcctcaatttcgaaggcgct
ggcgcccaggcacgcgtgcaggtcaacttcgccgaaggcagcaagtggctgatgatgggc
tatgcgaagctggtggcgttgtag
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