Photorhabdus asymbiotica: PAU_00351
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Entry
PAU_00351 CDS
T00941
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pay
Photorhabdus asymbiotica
Pathway
pay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAU_00351 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pay03021
]
PAU_00351 (rpoC)
03400 DNA repair and recombination proteins [BR:
pay03400
]
PAU_00351 (rpoC)
Enzymes [BR:
pay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAU_00351 (rpoC)
Transcription machinery [BR:
pay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PAU_00351 (rpoC)
DNA repair and recombination proteins [BR:
pay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PAU_00351 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAQ82444
UniProt:
C7BI86
LinkDB
All DBs
Position
379957..384252
Genome browser
AA seq
1431 aa
AA seq
DB search
MVALVIGGSDMGRSPDRSNSDRSHFVKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSF
GEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQT
KVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLE
RSQILTEEQYLDALEEFGDEFDAKMGAEAIQSLLKNLDLENECETLREELNETNSETKRK
KLTKRIKLLEAFIQSGNKPEWMVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ
GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK
AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA
AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTR
DCVNAKGEGMVLTGPKEAERVYRAGLASLHARVKVRITEEVKDGEGNITTSTGLVDTTIG
RAILWMIVPRGLPYSLVNQPLGKKAISKMLNTCYRVMGLKPTVIFADQIMYTGFAYAARS
GASVGIDDMVIPEKKAGIIAEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAK
AMMENLSTETVINRDGEEEQQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSII
ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG
THDGILMTPVIEGGDVKEPLRERVLGRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEES
SVDSIKVRSVVSCETDFGVCANCYGRDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTF
HIGGAASRAAAESSIQVRNKGSLKLFNAKSVMNSAGKLVITSRNTELCLIDEFGRTKESY
KVPYGAVLGKGDGEAVNGGETVANWDPHTMPVVSEVSGIIRFADMIDGQTITRQTDELTG
LSSLVVLDSAERTGSGKDLRPALKIVNANGDDVLIPGTDMPAQYFLPGKAIVQLDDGVSI
SAGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEVSGIVSFGKETKGKRRL
VISPLDGGDAYEEMIPKWRQLNVFEGEVVERGDVISDGPESPHDILRLRGVHAVTRYITN
EVQEVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSEFLEGEQVEYARVKVANRKLEQE
GKVPATYGRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR
LIPAGTGYAYHRDRMRRRQLNEASEAPQVSVDEATANLAELLNAGFGSDKK
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
gtggttgcactggttataggggggagtgacatgggtcgctctcctgacaggtctaactcc
gacaggagccatttcgtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaa
gagtttgatgcgatcaaaattgctctggcctcaccagatatgatccgttcgtggtcgttt
ggtgaagtgaaaaagccggaaactattaactaccgcacgttcaaacctgagcgtgacggc
cttttctgcgcccgtattttcggaccggtaaaagactatgagtgcttgtgtggtaaatat
aagcgcttgaaacaccgtggtgtaatttgtgagaagtgtggtgtagaagttacccaaact
aaagttcgtcgtgagcgtatgggtcacattgaactggcttctccgactgcacacatttgg
ttcctgaaatcattgccatctcgcatcggtttgttgctggatatgccgctgcgtgatatt
gagcgtgtactgtacttcgaatcctatgtggtggtagaaggcggtatgaccagcttggaa
cgcagtcagatcctaacagaagagcaatacttggatgcgctggaagagtttggtgatgaa
ttcgatgcgaagatgggcgcagaagctatccagtctttgctgaaaaatctcgatttggaa
aatgagtgtgaaacgctgcgtgaagagttaaatgaaactaactctgaaactaaacgtaaa
aagctgaccaaacgtattaaactgttggaagcctttattcagtctggcaacaaaccagaa
tggatggtgctgacggttctgccagttctgccgccggatttacgtccactggttccactg
gatggcggccgttttgccacttcggatctgaacgatctctatcgtcgtgttattaaccgt
aacaaccgcttgaaacgcctgctggatctggcagcgccggatatcattgttcgcaacgaa
aaacgtatgttgcaggaagcggtagatgccttgctggataacggtcgtcgtggtcgtgca
attactggttctaacaagcgtcctctgaaatccctggcagatatgatcaagggtaaacag
ggtcgtttccgtcagaacctgttaggtaaacgtgttgactattccggtcgttctgttatc
accgtaggtccttacctgcgtctgcatcagtgtggtctgccgaaaaagatggcactggag
ctgttcaagccatttatctacggcaagctggaattgcgtggtttagcgaccaccattaaa
gcagccaagaagatggttgaacgtgaagaagcggttgtttgggatatcctagatgaagtt
attcgtgaacacccggttctactgaaccgtgcaccgacacttcaccgtttgggtattcag
gcattcgaaccggttctgatcgaaggtaaagcgattcaattgcacccactggtgtgtgcg
gcctataacgccgacttcgacggtgaccagatggctgttcacgtaccgctgacactggaa
gcccagttagaagcgcgtgcgctgatgatgtctaccaacaacatcctgtctccagcgagt
ggtgagccaatcatcgttccatcccaggacgttgttttgggtctgtactacatgactcgt
gactgtgttaacgcgaaaggcgaaggcatggtcttgactggccctaaagaagctgaacgc
gtatatcgtgcaggtctggcttctttgcatgcccgtgtcaaagtccgtatcacggaagaa
gtgaaagacggtgaaggtaatatcactaccagcactggtctggttgatacgaccattggt
cgtgcaatcctgtggatgattgtaccaagaggcctgccttactcactggttaaccagcca
ttgggtaaaaaagctatctccaagatgttgaacacctgttaccgtgtgatgggtctgaaa
ccaaccgttatcttcgctgaccaaatcatgtataccggctttgcctacgctgcacgctca
ggtgcatcggttggtatcgacgacatggttatcccagagaaaaaagcggggatcattgca
gaagcggaagcggaagttgctgaaattcaggaacagttccagtctggtctggtgacagcc
ggtgaacgttataacaaggttatcgatatctgggccgcagcaaacgagcgtgttgctaag
gcaatgatggaaaacctgtcaaccgagactgtgattaaccgtgacggtgaagaggaacaa
caagtttctttcaacagcatctttatgatggctgactccggtgcgcgtggttctgccgct
cagatccgtcagttggcgggtatgcgtggtttgatggctaaaccagacggttccatcatc
gaaaccccaatcacagcaaacttccgcgaaggtttgaacgtactccagtacttcatctca
acccacggtgctcgtaaagggcttgcggataccgcactgaaaacagcgaactccggttat
ctgactcgtcgtctggttgacgtggcacaggatttggttgttacagaagacgactgtggt
actcacgacggtattctgatgacgccggtcattgaaggtggtgatgttaaagagccacta
cgtgagcgtgtattgggtcgtgtgacggcggaagatgttctgaaaccaggtacggctgac
attctggtgccacgtaacactttgctgaatgagaaatggtgtgatctgttagaagagagc
tccgttgacagcattaaagtacgttctgttgtaagttgtgaaactgactttggtgtttgt
gcaaactgttatggtcgtgaccttgctcgcggacacatcatcaataaaggtgaagctgtt
ggtgttattgcggctcagtccatcggtgagccgggtacacagttgacgatgcgtacattc
cacatcggtggtgcggcatctcgtgcagcagccgaatccagtattcaagttcgtaacaaa
ggtagcttgaaactgtttaatgctaaatccgtgatgaactccgcaggcaagctggtgatt
acttcccgtaacactgaactgtgtctgattgacgaatttggccgtactaaagaaagttat
aaagtaccttatggtgcggtactcggtaagggtgatggtgaggcagttaacggtggcgaa
accgttgctaactgggacccacataccatgccagttgtcagtgaagtatccggtatcatc
cgttttgctgacatgatagatggtcagactattactcgtcagactgatgaactgacaggc
ctgtcttcattggttgttctggatagtgcagagcgtactggtagtggtaaagacttgcgt
ccggcactgaaaattgttaatgccaatggtgatgatgtattgatcccaggtactgatatg
cctgctcaatacttcctgccaggtaaagcaattgttcaattggacgatggcgtcagcatc
tcggctggtgacacgttagcacgtattcctcaggaatccggcggtacgaaagatattacc
ggtggtctgccgcgtgttgctgacttgttcgaagcacgtcgtccgaaagagcctgctatt
ctggctgaagttagtggtattgtctcctttggtaaagaaaccaagggcaaacgccgtttg
gttatctccccattggatggtggtgatgcttacgaagagatgattcctaaatggcgtcag
ctcaacgtgttcgagggcgaagtggttgaacgtggtgacgtgatctctgatggtcctgaa
tctccacacgatattttgcgcctgcgtggtgttcatgcggttacccgttacatcaccaat
gaagttcaggaagtttaccgcctgcaaggggttaagattaacgataaacacattgaggtt
atcgttcgtcagatgctgcgtaaagcaaccattgaaagtgcaggtagttccgagttcctg
gaaggcgaacaggttgaatatgcccgcgttaaagtggcaaaccgtaagctggaacaggag
ggtaaagtccctgcaacttatggccgtgatctgttgggtattactaaagcgtctctggca
actgaatccttcatctctgcggcatcgttccaggaaacgacccgcgtactgactgaagct
gcggttgctggtaaacgtgatgagctgcgtggtttgaaagagaacgtcatcgtaggtcgt
ttgattccagctggtactggttatgcttatcatcgggatcgtatgcgtcgtcgtcagttg
aacgaagcttccgaagcaccgcaggtcagtgtagatgaagcaactgcgaacctggcagaa
ctattaaatgctggttttggtagcgataagaagtaa
DBGET
integrated database retrieval system
