Photorhabdus asymbiotica: PAU_01696
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Entry
PAU_01696 CDS
T00941
Symbol
rne
Name
(GenBank) rnase e, membrane attachment, mrna turnover, maturation 5s rna (rnas e)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pay
Photorhabdus asymbiotica
Pathway
pay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAU_01696 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pay03019
]
PAU_01696 (rne)
03009 Ribosome biogenesis [BR:
pay03009
]
PAU_01696 (rne)
Enzymes [BR:
pay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PAU_01696 (rne)
Messenger RNA biogenesis [BR:
pay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAU_01696 (rne)
Ribosome biogenesis [BR:
pay03009
]
Prokaryotic type
rRNA processing factors
PAU_01696 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
potato_inhibit
Motif
Other DBs
NCBI-ProteinID:
CAQ83788
UniProt:
C7BSU4
LinkDB
All DBs
Position
complement(1919433..1922513)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPNNYHPHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEVPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
RQHITALGRPDFTSKIKLYSGEVPLFSHYQIESQIESAFQREVRLPSGGAVVIDTTEALT
AIDINSSRATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTHQVHAIVPVQIASYLLNEKRQAVSAIERRQGDVGVVIVPNDQMQ
TPHFSVLRVRKGEEVSTLSYLLPQFHETGAANPQEDIQPERKRPEQPAISAFALPTDAPA
QAQQPSNKAKEKKPNQPTQVKTEQPSLLSRFLTALKKIFSTEEETVQRKDNKPSGNDNRR
SSERRNQRRQHSRKDRDDNNLRDEQRNNRDRDEPRKNRNTQQKNGVQDNNPVNTAARETQ
QQQRREQRAERQRRRQEEKRHQQQLEANKPDVVEHEVEECLPVIPRRQRRQLEQKIRITD
EVKETTVVTSLPQPVPVITEEQLPISIETTQVETVQPQQSSENKEQQDNVMPRRSRRSPR
HLRVSGQRRRRYRDERNLLQSPVPLSMAVASPEMASGKVWVRYPVVPISNDISEKTFESE
QQVVEQQNKSLPMIVTETAPTMVIATEFEQTIADLPKVEEVSVAYAAQDEIRPEATITEE
NNVVLQQTASVQQESTVIESVAITPITTEFEQQTQAEEIIVPKEISAVATVEESETETIK
QPVSIVKSHYAYAPMTRAPAPEMTEQFIVINEWQRPSSNFEGKGGAGGHSATNTATSPMA
KPQSFE
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcaactcaacaagaagagttgcgtgttgctctggttgat
gggcaacgcctttatgatttggatatcgaaagtccaggacacgagcaaaaaaaagcaaat
atctacaaaggtaaaatcacccgaattgaacctagtctggaagccgcttttgttgactat
ggtgctgaaaggcatggtttccttcctattaaagaaatagcccgcgaatacttccctaat
aactaccatccccatggtcgccctaatatcaaagatgttctgaaggaaggccaggaagtt
atcgttcaagtcgataaagaagaacgtggtaataaaggggctgcattaacaacatttatc
agtttggctggtagttatctggttctaatgcctaataatccccgcgctggcggtatttct
cgccgcatcgaaggtgatgaccgcacagaactgaaagaagccttggcatctttagaagta
ccggaaggcatggggctaattgttcgtaccgctggcgtcggtaaatccgcagaagcccta
cagtgggatttgtcattccgtctcaaacactgggaagctatcaaaaaagctgccgaaagt
cgctcagctccattcttaatccatcaggaaagcaatgttatcgtccgtgcttttcgtgac
tatctacgaccagacattggtgaaatattaatcgacaatcccaagattctcgacctggct
cgccaacatatcactgcgcttggccgcccggatttcactagcaaaatcaaactatacagt
ggcgaagttcctctatttagccattatcagattgaatcacagattgaatctgcgtttcag
cgtgaagttcgcctaccatcaggtggtgccgtagttatcgataccacagaagcgttaaca
gcgattgatattaactcttcccgtgcaacacgcggaggtgatattgaagagaccgctttt
aacactaatctcgaagccgcagatgaaattgcccgtcagttacgtttgcgtgacttaggt
ggcctgattgttatcgactttatcgatatgacaccagtacgtcatcaacgcgaagtagaa
aaccgcctgcgtgatgcagtccgtcaagatcgtgctcgtatccagattggtcgtatttcc
cgctttggcctgctggaaatgtcccgtcagcgtttgagtccatcactgggtgaatccagt
catcacgtttgtccgcgttgcagcggcaccggtactattcgtgataacgaatctttatcg
ttgtccatcttacgtctgattgaagaagaagctctgaaagagaacacgcatcaagtacat
gctattgttccggtacaaattgcgtcatatctgttaaacgaaaaacgccaagcggtcagt
gcaatcgaacgtcgtcagggagatgttggtgtagtgatcgttcctaacgatcaaatgcaa
accccgcacttctctgttctacgcgtgcgtaaaggtgaagaagtttctaccttgagttat
ctactgcctcagtttcatgaaactggcgcggcaaatcctcaagaagatattcaaccagaa
cgtaaacgtccagagcaaccagctatctctgcttttgctttaccaactgatgcgccagcc
caggcccagcaaccatcaaataaagcaaaagagaaaaaacctaaccaacctactcaggtt
aaaacggaacaacctagtctattaagtcgtttcttgactgccttgaagaaaatattcagc
acagaagaagaaacggtacaaagaaaagacaataaaccgtctgggaatgataatcgccgc
tcttctgagcgacgaaatcagcgccgccaacattcacgtaaagatcgtgatgataataac
ctacgtgatgagcaacgtaataaccgtgatcgtgacgaaccacggaaaaatcgtaatact
caacagaaaaatggtgttcaggacaacaaccccgtgaatacggctgctcgtgaaacccag
caacagcaacgccgtgagcaacgtgcagaacgtcaacgccgtcgtcaggaagaaaaacgt
caccagcaacaacttgaagccaataaaccagacgtcgttgagcatgaagttgaagaatgc
ctaccggttattcctcgccgtcagcgccgtcagcttgagcaaaaaatccgtatcaccgat
gaagtgaaagaaactacagttgtcacttccttgccgcagccagtacctgttatcacggaa
gaacaattaccaatatcaattgaaacaacacaggttgaaacagttcagccacaacaatcg
tctgaaaataaagagcaacaagacaatgttatgccgcgtcgctcccgccgctcacctcgt
catctacgtgtcagtggtcagcgccgtcgtcgttaccgtgatgaaaggaatctgcttcaa
tcaccggtgccattgtctatggcggttgcctcaccggaaatggcttctggcaaagtttgg
gttcgctatccagtggttcctatctctaacgatatttctgagaaaacttttgagtctgag
caacaagtcgttgagcaacagaataagtctctaccaatgatagtgacagaaacagcaccg
acaatggtaattgcaacagagtttgaacaaaccatcgctgacttgcctaaggtggaagaa
gtatccgtagcttatgctgctcaggacgaaatcagaccagaagcaactattacagaagaa
aataacgttgttttgcaacaaactgcatcagtacagcaagaatcaacagtaattgaatct
gttgcaataacaccaattactactgaattcgaacaacaaactcaggcagaagaaattatt
gttcctaaagaaatttcagcagtggctactgttgaagaaagtgaaactgaaacaattaaa
caacctgtttctatcgtcaaaagtcattatgcttatgcaccaatgaccagagcaccagcc
ccagagatgactgaacaatttattgttatcaacgagtggcaacggccttcttcaaatttc
gaagggaaaggaggcgctggaggccattccgcgactaacacagccacttctccgatggct
aaacctcaatcttttgaataa
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