Photorhabdus asymbiotica: PAU_01723
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Entry
PAU_01723 CDS
T00941
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (trcf)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pay
Photorhabdus asymbiotica
Pathway
pay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAU_01723 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pay03400
]
PAU_01723 (mfd)
Enzymes [BR:
pay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAU_01723 (mfd)
DNA repair and recombination proteins [BR:
pay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PAU_01723 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
SWI2_SNF2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAQ83815
UniProt:
C7BTG0
LinkDB
All DBs
Position
complement(1946158..1949604)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSSKYRYELPERHGDNRQLGRLTGAACAVECAEIVERHQGPVVLITKDMQNALRLHDEIH
QFTDCPIDLLSDWETLPYDSFSPHQEIISNRLSTLYRLPTMTKGILILPINTLMQRVCPH
EYLHGHALVMHKGQKLSRNKLRAELEQAGYRSVEQVLEHGEFATRGALLDLFPMGSEHPY
RIDFFDDEIDSLRIFDVDSQRTLTEVKQINLLPAHEFPTDKETIELFRSQWRERFEVRRD
GEHIYQQVSKGTLPAGIEYWQPLFFKQPLPSLFDYLPDNTLIISQDVNSSAERFWQDVQQ
RFINRKTDPMRPLLSPEELWLPADKLFSKLKNWPRIQLKTEELSKKTNHTNLDYQRLPDL
SIVAQNKAPLDKLRRFLEQFNGRVIFSVESEGRKETLQELLSRIKIKPIKISKLHEAQQP
GHFLMVGAAEHGFIDKKNELTLICESDMLGERVVRRRQDTRRTINTDTLIRNLAELRPGQ
PVVHLEHGVGRYQGLTSLEAGGIKAEYLILSYAGDDKLYVPVSSLHLISRYAGGADENAP
LHKLGGEVWSKARQKAAEKVRDVAAELLDIYAHRAVKPGFAFKHDWEQYQLFCQSFPFET
TPDQEQAINAVLDDMCQPIAMDRLVCGDVGFGKTEVAMRSAFLAIQNNKQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMISRFRSAKEQQQVVEMAAVGKVDIIIGTHKLLQSNLRWK
DLGLLIVDEEHRFGVRHKEQIKAMRADVDILTLTATPIPRTLNMAMSSMRDLSIISTPPA
RRLAVKTFVREYDSLVVREAMLREILRGGQVYYLYNDVENIEKAKLRLEKLVPEARIAIG
HGQMRERDLERVMTDFHHQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMTTIGFTLYMELLESAVDSLKAGREPSLEDLTNSQTDVELRMPVLLPDDYIPDVN
IRLSFYKRIASAKDKLELAELKVELIDRFGTLPDPGRYLLQSADIRLSAQKLGIKRIEAH
EKGGFIEFSEKNNVDSTYLIGLLQKQPEIYRLDGPAKLKFITDLNEKTLRLEFIQQLLGS
FEQHQLSA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaaaataccgttatgaacttcctgaacgccacggcgataaccgccagttaggt
cggcttactggtgcagcctgtgctgtagagtgtgctgaaattgtcgaacgccatcaaggc
cctgtcgtgctgataaccaaagatatgcaaaacgctttacgtttgcatgatgaaatccat
cagtttaccgactgccctatcgatctactttctgactgggaaacgctgccctatgacagt
ttttctcctcatcaggaaattatttccaaccgcctatctacactttatcgtctgccaacg
atgacgaagggtattttaatcctgccgataaataccttaatgcagcgggtttgcccacat
gaatatcttcacgggcatgcactggttatgcataaagggcaaaaactctctcggaataaa
ctccgcgctgaattagaacaggcaggatatcgcagcgttgaacaggttcttgaacatggt
gaatttgccacgcgaggcgcgttacttgaccttttcccaatgggaagtgaacacccttat
cgtatcgattttttcgatgatgaaattgatagtctgcgaatctttgatgttgacagccag
cgcacgctgactgaggtcaagcaaatcaacttactacctgctcatgaattccccacagat
aaagaaactattgaactgtttcgtagccaatggcgggagcgtttcgaagtccgccgtgat
ggtgaacacatttatcagcaagttagtaaaggcacgctaccagcaggaatagaatattgg
caaccgttgttctttaagcaacccttaccatcactgtttgattatttaccagataatacc
ctgattatcagtcaggatgtcaacagctctgctgaacgcttctggcaggatgttcaacaa
cgttttataaaccgcaaaactgacccaatgcgaccgcttttatcaccggaagaactttgg
cttccggctgataagctattctctaaactgaaaaactggcctcgtattcaactcaaaacc
gaagaacttagtaaaaaaactaaccacacaaatcttgattatcaacgactacctgattta
tccattgtcgcgcaaaataaagcgccgctggataaactccgccgtttccttgaacaattc
aatggtcgtgttattttctccgttgagagcgaaggccgtaaagaaacgctgcaagaatta
ttgtcacgaataaagattaaaccaattaaaatcagcaaattgcatgaggcacaacaacca
ggtcactttttgatggttggcgcggctgaacatggctttattgacaaaaagaatgaactt
actctgatctgtgaaagtgacatgctcggagagcgtgttgtccgccgtcgtcaggatact
cgccgcactatcaataccgatactctgatccgtaaccttgcagaattacgccccggtcaa
cccgtcgtccatctggaacatggtgttggtcgttaccaaggattaacctctctcgaagcc
ggtggcatcaaagcagaatacctgatactaagctatgcgggtgatgacaaactctatgtc
cctgtatcttcactgcatttaattagccgctacgcaggtggtgcagatgaaaatgcacca
ttacataaattaggcggagaagtatggagcaaagctcgtcaaaaagccgcggagaaagtc
cgcgatgtggccgctgagctgcttgatatttatgcccaccgtgcagtaaaaccaggattc
gcctttaaacacgattgggaacaatatcagctattctgtcaaagcttcccattcgaaacc
acgccagatcaggaacaggctatcaacgcagttctggatgacatgtgtcaacctattgca
atggatcgtctggtttgcggtgatgtggggtttggtaaaaccgaagttgcaatgcgctcc
gcatttctggcaatccaaaataacaaacaagtggctgtcctggttccaacaacacttctg
gctcagcaacactttgacaatttccgtgaccgttttgctaactggcctgtacgtattgag
atgatatcccgctttcgcagtgcaaaagagcagcaacaagtggttgaaatggcagccgtt
ggaaaagtcgatattatcattggtacgcataagttattgcaaagtaacctacgctggaaa
gatcttggtttgttaatcgtcgatgaggaacaccggtttggtgtacgccacaaagaacag
attaaagccatgcgtgcggacgtcgatattctgacgcttaccgcaacacctattccacga
acactcaatatggcaatgagtagcatgcgggatctatcgatcatttcaacacctcccgct
cgccgtctggcagtcaaaacattcgttcgcgaatatgacagcctagttgttcgagaagca
atgctgcgtgaaatactgcgtggtggccaagtttactatctctacaatgacgttgagaat
attgagaaagcaaaattacgtcttgaaaaattggtaccagaagcacggatcgccattggt
catggacagatgcgagagcgagatttagaacgggtgatgactgacttccatcatcaacga
tttaatgtccttatctgtactacgattattgaaactggcattgatattccaagcgctaac
actatcatcattgaacgtgctgaccatttcggccttgctcaattgcatcaactgcgtgga
cgtgttggacgctctcatcatcaagcttatgcttatcttctgaccccacatccaaaagca
atgacagccgatgcccataaacgtctggaagcaatcgcctcgctcgaggatttgggggcc
ggttttgcgttggcgactcacgatcttgaaatccgtggtgccggtgagctacttggtgaa
gaacaaagcggccagatgacaactattggcttcacactctacatggagctattagaaagt
gctgtcgactcgctaaaagcgggtcgtgaaccttcacttgaagacttaacgaatagccag
actgatgttgaattacgcatgcctgtcttattgcctgatgattatattcctgatgttaat
atacgtttgtccttctacaagcggattgccagtgccaaagacaaattagaattagctgaa
ttaaaggttgaattgatagaccgattcggcacattaccagatccaggacgttatttatta
caatcagcagacattcgcctatctgcccaaaaattaggtattaagcgcatagaagcccac
gaaaaagggggatttattgagtttagtgaaaaaaataatgttgattcaacttatcttatc
ggcctgttacagaaacagcctgaaatttaccggctggatggtcccgctaagcttaaattc
attactgatttgaacgaaaagacattacgtctggaatttatccagcagttacttggttct
tttgaacagcatcaactcagcgcctaa
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