Photorhabdus asymbiotica: PAU_03504
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Entry
PAU_03504 CDS
T00941
Symbol
sbcC
Name
(GenBank) nuclease sbccd subunit c
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pay
Photorhabdus asymbiotica
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pay03400
]
PAU_03504 (sbcC)
DNA repair and recombination proteins [BR:
pay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PAU_03504 (sbcC)
Archaeal homologous recombinant proteins
PAU_03504 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SMC_N
NTPase_1
cobW
AAA_19
AAA_22
AAA_16
AAA
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
CAQ85592
UniProt:
C7BK95
LinkDB
All DBs
Position
4102935..4106624
Genome browser
AA seq
1229 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTTEPFASNGLFAITGPTGAGKTTLLDAICLALYHKTPR
LMTISTSQNELMTRHTAESLAEVEFEVKGVAYRAFWSQRRARNQPDGNLQTPKVELAYKE
NGKILADKIQDKEEKVTEITGLDYGRFTKSMLLSQGDFAAFLNAKANERADLLEELTGTE
IYGVLSQQIYLQHKEAQSELEILQVKASAIDLLTKEQHQQYLEQQQQLANCELQLNQQIK
TQQYSEQWLTREEELQKFLTENNASLQQAEKALTHAEPQLQKLANSEPAEALRPLLDDKN
RTQSEHQKISKQLEDMRQQLQQQQQILTPIQQKVTNADSVREAHQQHRQQQETLISEQVI
PLDHQIDIQIKDLNLTQQHINEQKAEFETANQQYNAANQHSLSLTSQRKQLENYFEQQPH
HQYFGEKMTFWQHQFSWLQEQQQHINQWTQKADKLTTELTQFNDSLNKQQKDLKQQIENS
QPLKLAFEQAEQQLFNLQKQYSQEKLKKQFIEYQQKLTLQHKLEVLSPQILQLQATIANN
NLRLQQPEKLLKELPIQIEAVNKQLSEKQQHLEDLSQRIQLEQKIVSLEKERAQLKEGDP
CPLCGSEHHPAIQAYQHIELPKSEQRLKDLRQQSEQLQTTKISLVNKKEFQQQQYNHILQ
EIADAEPQLNSLAQQWQQICEILQIEISPLDKPALEAFVQQNQSAYQLSQTQLTEFELAE
KEYQKTEKTLTVHKEHIKEIERRVELDKQQYDARKKYLSELQPEIQQQQCKLTDVIEKIR
SELQEYDLLLPMLNDAENWLQQRKHEWKIYQNCRENWQQLQKEQAVVQNQTESLNKQKEE
YASRLNILHQKEQQQKQQLEKAQQQRQALFGEQSVAKITQALQQHSQKLEEEYQQALSHL
QQAQSHINQLTGAIYETEKNRSQAEYQRQLAEQNFNSVLEKSIFANQSIFEAALLPPEQR
KELRQLKEQLEQQQVQAKTLCQKAAETLQQHMKNRPKLLDQYTKPQLIEQLKNSTEELKK
NTLQQGELRNLLSNDATRRQQQKSLLEEIDHCRQNYDDWSYLNNLIGSADGAKFRRFAQG
LTLDHLVHLANQRLEKLHGRYYLQRKNCDGLELQVIDTWQADAIRDTKTLSGGESFLVSL
ALALALSDLVSNKTCINSLFLDEGFGTLDPETLDIALDALDSLNASGKTIGVISHVEAMK
ERIPVQIKVKKINGLGISKLAPEFRYTRQ
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaagatactgagtctacggctaaaaaacattaattcattacaaggtgaatggaaaatt
gatttcacaacagagccgtttgccagtaatggtctattcgcaataaccggccctaccggg
gcaggtaaaaccaccttactggatgctatctgtcttgcgctttatcacaaaacaccacgc
ctgatgacgatttctacctcacaaaatgaattaatgacccgccacacagcagaatcactg
gctgaagttgagtttgaagtgaaaggcgtcgcctatcgtgctttctggagtcaacggcga
gcacgtaatcagccggacggtaacttgcaaacacccaaagtcgaactcgcatacaaagag
aacggcaaaatcctagctgataaaattcaggataaggaagagaaagtcacagaaatcacc
ggcttggattatggccgtttcaccaaatctatgttgttatcccaaggtgattttgccgct
ttcctcaatgctaaagcgaatgaacgggctgatttattggaagaattaaccggtactgaa
atttacggtgttttatcccagcaaatttacctgcaacataaagaagcacaatcagagcta
gagattttgcaagtcaaggcatctgccattgatttgctaactaaagaacaacatcaacaa
tatctggaacaacaacaacaactcgctaattgtgaattacaactgaatcagcagataaaa
acacaacaatattcagagcaatggttaactcgtgaagaagagcttcagaaatttttgact
gaaaataatgcctctttgcaacaggcagaaaaagcactcacccatgcagaaccgcaactc
caaaaactggcaaacagcgaaccagcagaagcacttcgtccattattagatgacaaaaac
cgaactcaatctgaacaccagaaaatcagcaaacagttggaagatatgcgtcagcaactt
cagcagcagcagcagattctcaccccgatacagcaaaaagtgactaatgcagactctgtc
agagaagcacatcagcaacatcggcaacaacaagaaacactgatatcagaacaagtgatt
ccattggatcatcaaattgatattcagattaaagatcttaatcttactcaacaacacatc
aatgaacaaaaagcagaattcgaaacagctaatcagcaatacaacgcggcaaaccaacat
tccctgtcattaaccagccaaagaaaacaactggaaaattattttgagcaacaacctcat
catcaatatttcggtgaaaaaatgactttttggcaacaccaattctcctggttgcaagaa
cagcaacaacatattaatcagtggacccaaaaagcagataaactcacgactgaactcaca
caattcaacgatagtctgaataagcaacaaaaagatctaaaacaacagattgaaaatagc
caaccgctgaaactggcgtttgaacaagcagaacaacaactctttaatctacaaaagcaa
tattcacaggaaaaactcaaaaaacaattcattgaatatcagcaaaaactgactctacaa
cacaaattagaggtattgtccccgcagatcctgcaattacaagcaactattgccaataac
aatcttcgcttacaacaaccggaaaaattattaaaagaactgcctattcaaattgaagct
gttaataaacaactttcagaaaaacagcaacatctggaagatctttctcaacgtatccag
ttagaacaaaagattgtcagtctggaaaaagaacgtgcacaacttaaggaaggagatcct
tgccctctttgcggctctgaacatcatcctgctattcaagcttaccaacatattgaattg
ccaaaatcagaacaacggctaaaagatttacgtcaacaatctgaacagctgcaaacgacc
aaaatatcgctggtcaataaaaaagaattccaacaacaacaatacaaccatattttgcaa
gaaattgcagatgctgaaccacaactaaattcattggctcaacaatggcaacaaatttgt
gaaatattacaaatcgaaatttcaccgttagataaaccagcacttgaagcatttgtgcag
cagaaccaatctgcttatcagctttcccaaactcaattaactgaatttgaactagcagaa
aaggagtatcaaaaaacagaaaaaacactgacagttcataaagaacacattaaagaaatt
gagcgcagagttgaactggataaacaacaatatgatgcccggaaaaaatatctatctgaa
ctgcaaccagagatacaacaacagcagtgcaagctaactgatgttatcgaaaaaatacgc
tcggaattacaagaatatgatttactattgcccatgctgaatgatgctgaaaactggcta
caacaacgtaagcatgagtggaagatatatcaaaactgccgggaaaactggcaacagctc
caaaaagagcaagctgtcgttcaaaatcagactgaatcgttgaataaacagaaagaagaa
tatgcatcccgtttaaacatacttcatcaaaaagagcagcaacaaaaacagcaactcgaa
aaggcacaacaacagcgccaagcactatttggtgagcaatccgttgcaaaaataactcag
gcactacagcaacattctcagaaattagaagaagaataccagcaggcgttgtcacatttg
caacaagcacaatctcatattaaccagctcacgggggcaatttatgagacagaaaaaaac
cgtagccaagctgagtaccaaagacaactggcagaacaaaacttcaattctgtgttagag
aaaagcatatttgccaatcagagtatttttgaagccgcactattaccgccagaacaacgc
aaggagttacgacaactcaaagaacaacttgaacaacagcaagtacaggctaagaccttg
tgtcagaaagcagcagaaaccttgcaacaacacatgaaaaatcggcccaagttgcttgat
caatatacaaaaccacaactcattgaacagttgaaaaatagcactgaagaattgaaaaaa
aacacattacaacaaggggaattgagaaacctgcttagtaatgatgcaacacgccgtcaa
cagcaaaagtctttgttggaagaaatcgatcattgccgacaaaattatgatgactggagc
taccttaacaacctgattggctcagcagatggcgctaaattccgccgttttgcccaaggt
ctaactctggatcatctggttcatcttgctaatcaacgattggaaaaactccacggacgc
tactatttgcaacgcaaaaattgtgacggacttgaactgcaagttattgatacctggcaa
gccgatgctatccgtgatactaaaacactttccggcggcgaaagttttctggtcagcctc
gcactagctttagcgttgtctgatttggtcagcaataaaacctgtattaattcactgttt
ctggatgaaggctttggcacacttgatccagaaaccctcgatattgctctcgatgctttg
gatagtctgaatgcttccgggaaaacgattggcgtcataagccacgtcgaagccatgaaa
gaacggataccagtacagattaaagtgaaaaaaattaacggacttgggataagtaaactc
gcacctgagtttcgttataccagacagtga
DBGET
integrated database retrieval system
