Paenibacillus sp. YPG26: LDO05_00030
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Entry
LDO05_00030 CDS
T11186
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
payg Paenibacillus sp. YPG26
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payg03032
]
LDO05_00030 (gyrB)
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_00030 (gyrB)
Enzymes [BR:
payg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LDO05_00030 (gyrB)
DNA replication proteins [BR:
payg03032
]
Prokaryotic type
DNA Topoisomerases
LDO05_00030 (gyrB)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LDO05_00030 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HVO_2248
HATPase_c_3
PEPcase_2
DUF7674
Motif
Other DBs
NCBI-ProteinID:
USB33276
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Position
4518..6428
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AA seq
636 aa
AA seq
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MSMNEQSYDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEALGGYADH
IDVIVHQNNSVTVIDNGRGIPVGEHPKLKRSTLEVVMTVLHAGGKFGGGGYKVSGGLHGV
GVSVVNALSEKVIVEVKRDGHIYQQEYRRGAPQYDIRIIGDSEETGTKTTFTPDPEIFTE
TTVFDYDILLTRIRELAFLNKGISISLHDERTGQSNAFKYEGGISEYVQFLNQNKEALHE
TPIYVEGARDMIHVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYAR
KYNLIKDSDSNLTGDDVREGLTSIISVKIPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQ
EFMEENPSVAKRILEKALQASRAREAARKARELTRRKSALEVSSLPGKLADCSSKDAAIS
ELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIITALGTGI
GDDFDLAKARYHKVIIMTDADVDGAHIRTLMLTFFYRYMRKIIDAGYVYIAQPPLFKIER
NKVVRYAGSEKERDEIIAEFGENAKFNIQRYKGLGEMNATQLWETTMDPESRTMQQVSIA
DAIQADAIFDTLMGDNVEPRRDFIQEHAKYVTNLDF
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgaatgaacaatcctatgatgaaaatcagatacaggtgctcgagggcctggag
gccgttcgcaaacgtccaggtatgtatataggttcaaccagctccagaggtctgcatcat
ttggtatgggagatcgtggacaacagtatcgatgaggccttgggaggctatgctgaccat
atcgacgtgatcgtgcatcagaacaatagtgtaacggtcatcgataacggacgcggcata
cctgtcggtgagcatcccaagctgaaacgttcaaccttggaagtggttatgactgtcctc
catgccggaggcaagttcggcggcggcgggtacaaagtatccggtggtctgcacggtgtg
ggcgtatccgtagtcaatgctctttccgagaaggtgattgtcgaggttaagcgtgacgga
catatttatcagcaggaataccgccgcggggcacctcaatatgacatccgtattatcggt
gattccgaagagacgggcacgaagactacgttcaccccagatccggagattttcacggag
actacagtgttcgactatgatattctccttactcgtatccgtgagcttgcattcctgaac
aaaggaatctctatctctctgcacgacgaacggaccgggcaatccaacgcgttcaaatac
gaaggcggaatcagtgaatacgtccagtttctgaatcagaacaaagaggcacttcatgag
acaccgatctatgtagaaggcgcaagagacatgattcatgtagaagtcgcactgcagtac
aatgacagctatacagagaacatttattcttttgctaataatattaatacccatgagggc
ggaacccatgagtccggctttaagagtgcgctcacccggattattaacgattatgcccgt
aaatataatctgatcaaggacagtgactccaatcttaccggtgatgacgttcgggaaggt
ctgacctccattatctccgtcaagattcctgagccgcagtttgagggacagacgaagact
aagctcggcaacagtgaagtccgtggtattgtagagtctctatttgccgagaagctgcag
gaatttatggaggagaatccatctgtagccaaacgtatattggaaaaggctctccaagcc
tcccgcgcgcgtgaggcagctcgtaaagcacgggaactgacacggcgcaagagtgcgctg
gaagtcagctcacttccgggtaagcttgctgactgttcatccaaggatgccgcaatcagt
gaactctacattgtcgagggtgactctgccggcggatcagctaagcagggacgtgatcgt
cacttccaggccattcttccgctgaggggtaagatcttgaacgtggagaaagcccgcctt
gaccggatacttggcaatgccgagatcagagcgattataacagccctcggtacgggcatc
ggtgatgactttgatcttgccaaggctcgctatcacaaagtcatcattatgacggatgcg
gatgtcgatggagctcatattcggaccttgatgcttactttcttttatcgctatatgcgc
aaaattatcgatgcgggttatgtctacattgcccagccgccgctgttcaaaattgaacgt
aacaaagtggtgcgctacgcaggttccgagaaagaacgcgacgagattattgctgagttt
ggcgagaatgccaaattcaacatccaacgttataaaggtctcggtgagatgaatgctacc
cagctctgggagacaaccatggatccggagagccggactatgcagcaggtatccattgcg
gatgcaatccaggcagacgcgatctttgatacgctaatgggtgataatgttgagccacgg
cgtgactttattcaggaacatgccaagtatgtgaccaatctcgatttttaa
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