Paenibacillus sp. YPG26: LDO05_00210
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Entry
LDO05_00210 CDS
T11186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
payg Paenibacillus sp. YPG26
Pathway
payg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LDO05_00210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_00210 (mfd)
Enzymes [BR:
payg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDO05_00210 (mfd)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LDO05_00210 (mfd)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
USB33307
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Position
40396..43920
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AA seq
1174 aa
AA seq
DB search
MLQALIEAFSKDPDFESLSTGVSAGMKEQLISGLSGSSRQVMLAALHEQIQRPILVVTHN
MFSAQKIAEDLQEALSPEQVLLYPANELVAAEAAVSSPETLAQRIEVLLKCSQGFRGIVV
VPFSGVRRYVPVPEMLANAELKLELGGTIELDSFLTQLVELGYERVQRVENRGEMSVRGG
IIDIYPLTSKLAYRIELFDDEIDSIRTFDPADQRSVDQVKQVFLPPSKELIATGERLDRA
AEAVSARLADQMEKMTDRQAKIKLKEEISREIELLKEHVSFPEIYKYISLIYPENKTLYD
YMPKDTLLIIDEPARLLETGKQLERDEAEWHLHLFQNGKSLPGLPLSVESDKVVYERPFQ
TLFMSLFLRQVPHIQPQNILNFTSRAMQDFHGQMNVLKSEMDRWKKSGAQVLMLASNEER
LERMRRVLQDYDIDEPTLLQGNLQTGFELPSIHLVVITEGEMFSQKQRKARKVGRSMDNA
ERIKSYTELKVGDYVVHQNHGIGKYIGIGTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDL
IQKYVGSEDKEPKVYKLGGTEWTRVKSKVQSSVQDIADELIKLYAERQASPGYGFEKDTP
EQQEFEAMFPYDETRDQMRAIEEIKKDMERSRPMDRLLCGDVGYGKTEVAIRAAFKCAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPINIQVLSRFRSRKEQNETAKGIKQGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKRLKVNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQALVREAIERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEAKVGIGHGQMSEQELEKTILNFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKSLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVTLLGEEPPEKHEWNTVLDLS
IDAYLPPEYIYDSIQKIEIYKKAATLTTLEEVSELGDELLDRFGEPPEAVENLLAAARLK
IYAKQYGIESVTRRGDEVLLKFHEGREKALIPAKFAEVGNQFGRRVQFNQGTGILIQIKI
KGLSDKEMMGLLEQFLESLKDAFKSKGELHDVAK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttatagaagcattttctaaagacccggatttcgagtctctaagcacc
ggtgtatcagccggcatgaaggaacagctcatctccggtctatcaggctcctccagacag
gtcatgctggcagctctgcatgaacaaattcagcggccgattctggtagtcacgcataat
atgttctccgcccaaaagattgccgaggatctgcaggaggcgctgtcgcctgagcaggtt
ctcttatatccggcaaatgagctggtggctgctgaagctgcggtatcgagtcccgagact
ctcgctcagagaatagaagtactgctcaaatgctcgcaggggttccgcgggattgttgtc
gtgcctttctccggggtgcgcaggtatgtacccgtgcccgagatgcttgccaacgctgag
ctgaagcttgaactaggcggcacgattgagctggattccttcctgacacaattggtcgaa
ctgggttacgaacgggttcagcgtgtcgagaaccggggggagatgagcgttcgcggaggc
attatagatatttatccgctaacgtcgaagcttgcctaccggattgagttatttgacgat
gagattgattccattcgtacgttcgatcccgccgaccaaaggtcagtggatcaggtcaag
caggtgttcctccctccaagcaaggagcttatcgctacaggggagcgtctggaccgggcg
gctgaggccgtgagtgcgaggcttgcggatcagatggagaagatgaccgaccgccaagcg
aagatcaagctgaaggaagagatttcccgcgagatagagcttctgaaggagcacgttagt
ttcccggaaatctataaatatatttctctgatttatcccgagaacaagaccttatacgat
tatatgccgaaggataccctgctgattatagacgagccggcaaggctgctggagacaggc
aagcagcttgagcgggatgaggcggagtggcatcttcatttgttccagaacgggaagagc
cttccgggacttcctctgtcggttgagagtgacaaggttgtctatgagcgtccattccag
accctcttcatgtcgctatttctgcgtcaggtgccgcatatacagcctcagaatatcctg
aatttcaccagcagggcgatgcaggatttccatggacagatgaatgtgctgaagtcagag
atggaccgctggaaaaagagcggcgcgcaggtgctcatgctggccagcaatgaggaacgc
cttgaacgtatgcggcgtgttctccaggattacgatattgacgagccgaccttgctgcag
ggcaatctgcagaccggctttgagctgccttccattcaccttgtagtcattactgaggga
gagatgttctcacagaagcagcgcaaagcccgcaaggttggacgcagcatggataatgct
gaacggatcaagagctatacggaactgaaagtcggcgattatgttgttcatcagaaccac
ggaatcgggaaatacattggcatcggcacccttgaggttggcggaattcacaaggattac
ctgcatattatgtatgccgggggtgacaagctgtccgtaccgattgaccagattgacctt
atccagaagtatgtagggtctgaagacaaggagcccaaggtctataagctgggcggcacg
gaatggacccgggttaagagcaaggtccagtcctcggtacaggatattgccgacgaattg
atcaagctgtatgccgagcgtcaggcatccccgggttacgggttcgagaaggatacgccg
gagcagcaggaattcgaggcgatgttcccgtatgatgagacccgtgatcagatgcgggcc
atcgaagagatcaagaaggatatggagcggagccgtccgatggatcgcctgctctgcggt
gacgtgggctacggcaagaccgaggtcgcaatccgggcagcattcaagtgtgcgattgag
ggcaagcaggtggctgtacttgtgccgacaacgattctggcacagcagcactatgagacc
ttccgtgagcggttctcgggctatccgatcaatattcaggtgctcagccgattccgcagc
cggaaggaacagaatgagacggccaagggaatcaagcagggaacggtcgatattgtgatc
ggcacccatcgcctgctgtcacaggacctggtgttcaaggacctcggactgctgattgtg
gacgaggaacagcggttcggcgtcacgcacaaggagaagctcaagcgcctcaaggtgaat
gtcgatgtccttacgctgacggcaacgcctattccgcggacacttcatatgtcgatgctg
ggtgtaagggacttatccgtcatcgagacgcctcccgagaaccgcttcccggtacaaacg
tatgtggtggaacacagtcaggcacttgtgcgggaggcgattgagcgagagcttgcccgc
ggaggccaggtatactatctgtacaaccgggttcaggggatccaggagatggccgcccaa
atctccatgctcgtgccggaggccaaggtagggattgggcatggacagatgtcggagcag
gagctggagaagaccattctgaatttcctggacggagaatatgatgtgctcgtaagtacg
agcattattgagaccggggtagatattccgaacgtgaatacactgattgtgcatgatgcg
gacaaaatgggcctttcccagctgtatcagctgcggggacgggtcggccgttccaatcgg
atcgcctatgcctacttcacatatcagcgcgataaatcgctcacggaagtggcggagaag
cggctgcaatctatcaaggagttcacggagcttggctccggcttcaagattgccatgcgg
gacctctctatccgcggagcggggaatctgcttggtgcggagcagcatgggttcatcgct
tcggtcggcttcgatctgtattcccagatgcttgcggaagagattcagaagcgcaaggtg
actctcctcggagaagagccgccggagaagcacgagtggaatactgtgcttgatttgagc
attgatgcctatttaccgcctgaatatatctatgatagtattcaaaaaattgagatctat
aaaaaggcagccacgcttacgacacttgaagaggtatccgagcttggagacgagcttctc
gaccgtttcggagaaccgcctgaggctgtggagaatctgcttgctgcggccaggctgaag
atttatgcgaagcagtatggaattgagtcggttacacgtcgtggtgatgaagtcctgctg
aagttccacgaaggccgggagaaggccttaatcccagctaaatttgccgaagttggaaat
caattcggaagacgtgtacaatttaatcaagggacgggcatcctgattcagattaaaatt
aaaggtttgagtgacaaagagatgatgggtctgctggaacagttccttgaatcccttaag
gatgcattcaaatcgaagggagaattacatgatgttgcgaaataa
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integrated database retrieval system
