Paenibacillus sp. YPG26: LDO05_06735
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Entry
LDO05_06735 CDS
T11186
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
payg Paenibacillus sp. YPG26
Pathway
payg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LDO05_06735 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
payg03021
]
LDO05_06735 (rpoD)
Transcription machinery [BR:
payg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LDO05_06735 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
USB34464
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Position
1461563..1462696
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AA seq
377 aa
AA seq
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MANDQHAELETELTLDQVKDQLIEKGKKKSSLSYKEIVEKLSPFDQDPEQMDEFFEQLGD
LGIDVSNESDEELISRPGDDEREREDKDDFNFDDDLSLPPGIKINDPVRMYLKEIGRVPL
LSGDDEIELAKRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA
VEKFDFKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELG
REPAPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAA
AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL
RKLRHPSRSKRLKDFLE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgatcagcatgctgaactagaaacggaacttacactcgatcaggtgaaggat
cagctaattgagaaaggcaagaagaaatcctcattatcctataaggaaattgttgagaaa
ttatcccctttcgatcaggatcctgaacaaatggatgagttctttgaacaattaggggac
cttggaattgacgtatccaatgaaagtgatgaggagctgatctcccgtcccggtgatgac
gagcgtgaacgtgaggacaaggatgatttcaactttgatgatgatctctccctgccgccg
ggaatcaagatcaatgacccggtccggatgtatctgaaggagatcgggcgtgttcccctc
ctgtcaggtgatgatgagatcgagctcgccaagcggatagaggaaggcgatgaagaagcc
aaacgccggctggccgaggcgaatcttcgtctcgtggtgagtatagccaagcgttatgta
ggacgaggaatgctattcctggacttgatccaggaagggaacatgggtcttatcaaagcc
gtggagaaattcgacttcaagaagggcttcaaattcagtacgtacgcgacctggtggatt
cgtcaggcgattacgcgtgcgattgccgaccaggccagaaccattcggattcctgtgcat
atggtggagaccattaacaagctgatccgcgtgtcccgtcagctgctgcaggaactgggc
cgtgagccagcccctgaagaaattgctgcagagatggagctcagtgtggagaaggttcgt
gagattatgaagattgcccaggagccggtgtctctggagacaccgatcggggaagaggat
gattctcatctgggtgactttattgaggatcaggaggcgctcgcacctgctgatgcggcg
gcttatgaactgcttaaggaacagctcgaggatgttctggacaccttgaccgaaagagaa
gagaacgtgcttcgtctccgttttggcctggatgatggccggaccagaacgcttgaggaa
gtgggtaaagtgttcggggttacgagggaaagaattcgccagattgaagccaaggcttta
cggaagctccgtcaccctagccgcagcaagcggcttaaggatttcctcgaatag
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