Paenibacillus sp. YPG26: LDO05_12250
Help
Entry
LDO05_12250 CDS
T11186
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
payg Paenibacillus sp. YPG26
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payg03032
]
LDO05_12250 (topA)
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_12250 (topA)
Enzymes [BR:
payg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LDO05_12250 (topA)
DNA replication proteins [BR:
payg03032
]
Prokaryotic type
DNA Topoisomerases
LDO05_12250 (topA)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LDO05_12250 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
DUF7340
Auto_anti-p27
Toprim_3
Toprim_2
zf-C2H2_ZNF462
Motif
Other DBs
NCBI-ProteinID:
USB32107
LinkDB
All DBs
Position
complement(2602293..2604392)
Genome browser
AA seq
699 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKSASKKVKNIYLAADPDREGEAIAWHLAHLLDVDASKSCRVVFNEITKDAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EISEFVPEEYWSITAALKIEDTSFEAKFHRLKGEKMELPNEEAVKQVLQAVEGASFQVSE
VKEKERLRHPSAPFTTSSMQQEAARKLNFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRIAVSAQEEAKDYIVSKYGDKFVPEAPRQYSKKAANAQEAHEAIRPTSALRDPDSI
KSFLSRDQFRLYKLVWERFMASQMASAVLDTLSVDIAAGDATFRAVGSKVRFHGFMKVYV
EGNDDGTTDDDKFLPPLKAGDVLETEHIDPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEQFFPEILDVEFTAHMEGDLDHVEVG
EEDWVKVLSEFYESFEKRLEVAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCKEGHVVERRSKKGRVFYGCDRYPECDFVSWDKPSPKP
CPQCGSMLVEKRNKQGTKLQCTGCDFTEAVEDNDDDASE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtggcggattcactagttattgtcgagtctcctgcgaaagcaaagacgatcggcaaatat
ctgggcagtaaatatatcgtgaaagcgtctatgggtcacattcgcgatttgccaaagagt
cagattggagttgaggtggagaacgacttcaatcccaaatatattaccatccgcggcaag
ggttctatattaaaggaactgaaaagcgcgagcaagaaagtcaagaacatctatctggcg
gctgaccccgatcgtgagggtgaagcgattgcctggcaccttgcgcatctgcttgatgtg
gatgccagcaagagctgccgggtagtctttaatgaaattaccaaggatgctgtcaaggat
gcattcaaaacgccgcgcaaaattaatatggatctggtcaatgcccagcaggccagacgt
atattagaccgtttggtaggatacaagatcagtcctcttttatggaagaaggtcaagaaa
ggcttgtctgccggacgcgttcagtctgtggcggtcaagatcattctcgaccgggagaat
gaaatctccgagttcgttcctgaagagtactggagcattacagccgctctgaagattgaa
gacacctccttcgaggccaaattccatcggctcaagggcgagaagatggagctgccgaac
gaagaagccgtcaagcaggtgctccaggcggttgaaggggcttcattccaggtaagcgaa
gtgaaggagaaggaacgtctgcgtcatccttctgctccgttcacaacgagttccatgcag
caggaagctgcgaggaagctgaacttccgtgcggccaagacgatgtcagtcgctcagcag
ctatatgagggcgttgagcttggcaaggagggtacggtgggtctaatcacttacatgcgt
acagactccacgcgaatcgcggtctctgcccaggaagaggcgaaggactatattgtgagt
aaatacggcgacaaatttgttcctgaagccccgcgtcagtattccaagaaggcggcgaat
gcccaggaagcccacgaagccatccgtccaacctccgcactgcgcgatcctgattccatt
aaatctttcctgagccgtgatcaattcaggctatacaagctggtatgggaacgattcatg
gccagtcaaatggcttcagccgttctggatacgctttctgtggatatagccgctggagat
gcgaccttccgggccgttggctccaaggtgagatttcatggattcatgaaggtctacgtg
gaagggaatgacgatggaactacggatgatgacaagtttctgcctcccctgaaggccggt
gatgtgctggagaccgaacatattgatccgaagcagcacttcacccagcctcctccaagg
tatacggaagcccgcttggtcaagacgcttgaagagctgggaatagggcgtccaagtact
tatgcccctacgctggagacgatccagaagcgtggttacgtagctatcgaagagaagaaa
ttcatgcctacagagcttggcgaactcgtaatagaacaaatggaacagttcttccccgaa
attcttgatgtggaattcaccgcacatatggaaggggatctcgaccatgtggaggtaggt
gaggaagattgggtcaaggttctgagcgagttctacgagtccttcgagaagcgccttgag
gtagccgaagaggaaatgaaagaaattgagatcgaggatgaggtatctgacgagatttgt
gagaaatgcggcaagccgcttgtctacaagcttggcagatttggcaagttcctggcctgc
tccggattcccggactgccggaataccaaaccgatcattaaggatatcggggtgacctgt
cccaaatgcaaagaagggcacgtagtggaacgccgcagcaagaaggggcgtgtgttctac
ggatgtgaccgttatcctgaatgcgacttcgtgtcttgggataagccttcaccgaagccg
tgtccacaatgtggttccatgcttgttgagaagcggaataagcagggaacgaagctccaa
tgtacggggtgcgactttacagaagctgttgaagataatgatgacgatgcatccgagtaa
DBGET
integrated database retrieval system
