Paenibacillus sp. YPG26: LDO05_13685
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Entry
LDO05_13685 CDS
T11186
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
payg Paenibacillus sp. YPG26
Pathway
payg03030
DNA replication
payg03410
Base excision repair
payg03420
Nucleotide excision repair
payg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDO05_13685 (polA)
03410 Base excision repair
LDO05_13685 (polA)
03420 Nucleotide excision repair
LDO05_13685 (polA)
03440 Homologous recombination
LDO05_13685 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payg03032
]
LDO05_13685 (polA)
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_13685 (polA)
Enzymes [BR:
payg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LDO05_13685 (polA)
DNA replication proteins [BR:
payg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LDO05_13685 (polA)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LDO05_13685 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LDO05_13685 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
baeRF_family2
HHH_2
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
USB32366
LinkDB
All DBs
Position
complement(2894203..2896869)
Genome browser
AA seq
888 aa
AA seq
DB search
MEKLILIDGNSIIYRAFFAMPPLTNSSGMHTNAVYGFTNMLLRLIQEEQPTHIMVAFDAG
KETFRHEGYQEYKGGREKTPPELSEQFPILKELLDSFGITRFELKGYEADDIIGTVSRQA
DESGRQVIVVTGDKDMLQLVSDNVKVSLTRKGVSEVEPYGVQEIQERYGLTPAQIVDLKG
LMGDTSDNIPGVPGIGEKTALKLLHQFGSVEEVLARTDELKGKQKENLINHAEDARMSKR
LATIFREVPLEHLWDDMVFGGIQEEKAAPMLRKLEFKSLIERLSYAAGPNPGEGSSGQAQ
TAEPIDVTVVDVDGVDALAAKLGEIEVLHVETRGDNPHHADIIGLVLSSKENHYYIPFEL
LKQQAGEPVRQWLADAQAPKKGYDLHRIDLALHWQGIAFEGAAFDIQLAAYLLDPTENNQ
TLSGLASKYELSFLAPDDEVFGKGAKYKVPDTGVLSLHLAHKSAAAQKLIPLQEQELEKN
EMNRLFYELEMPLSRILADMEKQGIAVNREDLQELGKEFEIQIRRLAQHIYELAGMEFNI
NSPKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQSILEYRQLTKLQSTYV
EGLLKEIRPETGKVHTYYRQTIAATGRLSSQYPNLQNIPIRMEEGRKIRKVFVPSESGWH
ILAADYSQIELRVLADISGDERLKEAFVNDMDIHTKTASDVFGVPADQVDSDMRRSAKAV
NFGIVYGISDYGLSQNLNITRKEAAKFIDQYFEVFQGVRRYMDDIVKEAKRDGYVKTLLE
RRRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVLMSDTLREHKLKSRMLLQV
HDELVFEVPEDELEIMTKLVPETMEKALSLSVPLKAEVSSGLNWYEAK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggagaaattgattctgattgatggcaacagcattatttaccgggcgttcttcgcgatg
cctccgcttacgaattccagtggaatgcatacgaatgccgtgtacggtttcacgaatatg
ctcctgcgtttgattcaggaggaacagcccacacatatcatggtggctttcgatgcgggg
aaagagactttccggcatgaaggctaccaagaatataaaggaggccgggagaagacacct
ccagagctctctgaacaattccctatacttaaggagctgctcgatagcttcggaataacc
cggtttgagcttaagggctacgaagcggatgatattatcggcacggtgagcagacaggca
gatgaatcaggacgccaggttattgttgtcactggagataaggacatgctgcagctcgtc
tcggacaacgtcaaggtctcattaacgcgcaaaggggtctccgaagtggagccttacggc
gtacaggagattcaggagcgctatggcctcactccagctcagattgtggatctcaaaggg
cttatgggggatacttcagataatattcccggtgtaccgggtattggcgagaagacggcg
cttaagctgcttcatcaattcggctctgtggaagaggtgcttgcacgtacggatgaacta
aagggcaagcagaaggagaacctcattaaccacgctgaagatgcgcgtatgagtaagcgg
cttgccacgatcttccgcgaggtgccgcttgagcatctgtgggatgacatggtattcggc
gggattcaggaagaaaaggcggctccgatgctgaggaagctcgagttcaaatccttgatt
gagcgcctatcctatgcggcgggtccgaacccgggcgaaggaagttcaggtcaggcacag
acggccgagcccattgacgtcacggtggttgatgtggatggggttgacgcgcttgctgcc
aagctcggagagattgaagtgcttcatgtcgagactcgcggggataatcctcatcatgcg
gatatcatcggacttgttctatcatccaaggagaaccattactatattccctttgaactg
ctgaagcagcaggcgggcgagcctgtccggcagtggcttgcggatgcccaggctcccaag
aagggctatgatcttcacaggatcgacctggctcttcactggcaggggatcgcttttgag
ggagcggcatttgacattcagcttgcagcctatctcctggatccaaccgagaacaaccag
acgctaagcgggttggcgtccaagtatgaattatccttcctggctccggatgatgaagtg
ttcggcaagggagcgaaatacaaggtgcccgataccggggtgctgagccttcatttagct
cataaatcggcagccgcccagaagcttattccgcttcaggagcaggagctggagaagaac
gagatgaaccgtctgttctatgagcttgagatgcccctgtcccgtattctagcagacatg
gagaagcagggcatcgccgtgaaccgtgaagaccttcaggagcttggcaaagagttcgag
atccagatccgcagactggctcagcatatctatgagctggccggtatggaattcaatatt
aactcgcccaagcagctgggtgaaattctattcgacaagcttggacttccggtaatcaag
aagaccaagacgggatactctacggatgctgaagtgctggagaagctcgcgccctatcac
gatattgtgcagtcgatcctggaataccgccagttaaccaagctccagtcgacttatgtg
gaaggtctgctcaaagagatccgcccggagacgggcaaggtccatacgtattaccgtcag
accattgcggctacgggacggctaagcagccaatacccgaatctgcagaatatcccgatc
cgaatggaagaaggacgcaagatccggaaggtgttcgttccttccgagtccggatggcat
attctggcggcagactattcccagatcgagctccgtgttctggcggatatctcaggtgat
gaacggctgaaggaagcgttcgtgaatgacatggacattcatacgaagacggccagcgat
gtgttcggtgtgcccgccgatcaggtggattcggatatgcgccgttccgcgaaagctgtt
aatttcggaatcgtgtatggaatcagcgactatggcctatcccagaatctgaacattaca
cgcaaagaagcggccaagttcattgaccagtattttgaggtattccaaggggttcgccgg
tatatggacgatatcgtcaaggaagcgaagcgcgacggatatgttaagactttgctggaa
cgccgccggtatctgccggagattaatgcttcgaatttcaacctgcgttcattcgccgag
cgtacagcgatgaataccccgattcagggaactgcggcggatattatcaagctggctatg
gtcttgatgagtgataccttaagagaacataagctgaagagccgcatgcttctgcaggta
cacgatgagcttgtgttcgaagtgccggaagatgagctggagatcatgaccaagctggtt
ccggagacgatggagaaggcgctgtctttgtctgttccgcttaaagctgaagtgagcagt
gggcttaactggtatgaagcgaagtaa
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