Paenibacillus sp. YPG26: LDO05_16130
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Entry
LDO05_16130 CDS
T11186
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
payg Paenibacillus sp. YPG26
Pathway
payg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDO05_16130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
payg03021
]
LDO05_16130 (rpoC)
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_16130 (rpoC)
Enzymes [BR:
payg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDO05_16130 (rpoC)
Transcription machinery [BR:
payg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDO05_16130 (rpoC)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDO05_16130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
USB32762
LinkDB
All DBs
Position
complement(3371076..3374690)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDVEKELDFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNEPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDDNQAKGSGMILGSVNEAVSAYQRGAASLHARVVIP
AKALNKEGFTPEQQKALLVTTVGKIIFNEIFPSSFPYINEATRDNLFNGTPDRYFVHEKG
ADLAERINDPAIAGAVGKEYLGSIIARCFETYHTTETSVILDRIKQLGFTYSTRAGVSIA
VSDVIVPEEKATIMRESDEKVRVVTNQYRRGLITDEERYDRVIDIWSKSKDQLTEVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIYELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGITVSRIQDGKEIIEDL
FDRIEGRYSFQTIKHPETGEVIVARNELIDTDRANAIVNAGVEKLQIRSVLSCRARHGVC
KKCYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISELDGVVKEIREAKDRREIEIQGEAETKVYSVTYGSRLRVSEGQEIEA
GDELTDGSIDPKEILRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
VDAGDTTLLPGSFVDIYEYETANKEAILSDKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRSVQFDDQEEGDVSAENLET
VSVE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaatttcgagtttatgaaaattgggcttgcttccccagataaaatt
cgttcttggtcccgcggagaagtgaagaagccggagacgattaactatcgtacgctgaag
ccggagaaagaggggctcttctgcgagaaaattttcggtcctacaaaagactgggaatgt
cactgcggtaagtacaagcgtgtgcgttacaaaggcgttgtctgcgatcgctgcggcgtt
gaagtaacacgtgcgaaggtccgccgtgagcgcatgggtcacatcgagctggctgctcca
gtttctcatatatggtatttcaaagggattccaagccgtatgggattggctttggatatg
tcccctagatcactggaagagattatttattttgcatcatatgttgtaacagatcctggc
gatacgccgcttgagaaaaagcagctcctgtccgagaaggaataccgcagctaccgtgag
aaatacggctacggcttccaagccggtatgggtgccgaagcagttaagaagcttctgcag
gatatcgacgtggagaaagagcttgatttcctgaaggaagaactgcgtactgctcaaggt
cagcgtcgtaaccgtgcgatcaaacgtcttgaagttatcgaagccttccgcaactccggc
aatgagccggagtggatgattctggacgttcttccggtcatccctccggaacttcgtccg
atggttcagctcgatggcggacgttttgcaacctctgaccttaatgacctgtaccgccgc
gtaatcaaccggaacaaccggttgaagcgtctcctggatctcggagcacctgatattatc
gtccaaaacgagaagcggatgcttcaagaagctgttgatgcgctgatcgataacggccgc
cgcgggcgtcctgtaactggtcctggtaaccgtccgctcaaatctctcagccatatgctg
aaaggtaagcaaggacgcttccgtcagaacctgctcggtaaacgggttgactattctggt
cgttccgttatcgtcgtaggtccttacctgaagatgtaccaatgcggactgcctaaggaa
atggcacttgagttgttcaaaccattcgtgatgaaagagcttgtcaacaaaggacttgct
cataacatcaagagcgcgaagcgcaaggttgaacgtgtcagccctgaagtatgggacgta
ctcgaagaagtgatcaaggagcatccggttcttctgaaccgtgcaccgacgcttcaccgt
ctgggtatccaagcgttcgagcctatcctggtagaaggacgcgcgattcgtcttcacccg
ctcgtatgtacggcttacaatgccgactttgatggtgaccaaatggcggttcacgttcct
ctgtcagcggaagcgcaagcagaagctcgaatcctgatgctggcatcgggtaacatcctg
aacccgaaagatggcaagccagttgttactccatcccaagatatggtccttggatccttc
tacctgacaatggatgataaccaggctaaaggttcaggcatgattctgggaagcgtgaac
gaagccgtgtccgcttaccagcgtggagcagcatccctgcatgcacgtgtcgttattccg
gctaaagccttgaataaagaaggatttacacctgaacagcaaaaagcgctgttggtaact
acggtagggaaaatcattttcaatgaaatcttcccatccagcttcccttacattaacgaa
gctacccgggataacctgttcaatggtacaccggatcgctactttgtacatgagaagggt
gcggatctcgcagaacgtatcaatgatcctgctattgcaggagctgttggtaaggagtat
ctgggatccatcattgcacgctgcttcgagacttatcacacgaccgaaacgtctgtgatt
ttggatagaatcaaacagcttggattcacgtattctacgcgtgcgggtgtaagtattgcc
gtatctgacgttatagtacctgaagaaaaagcaaccattatgcgcgaatccgatgagaaa
gtacgtgtagttacgaaccagtatcgccgcggcttgattacggatgaagagcgttatgac
cgtgtaattgacatctggtccaaatccaaggaccagttgacagaagtcctcatgaaatcg
atggaccgcttcaactccatcatgctcatggttgactccaaagcgcggggtaacaaatcg
cagatcactcagctgggtgggatgcggggtctgatggcgacaccatcaggacgtatctat
gagcttccgatcaaagcgaacttccgtgaaggtcttacggtcctcgagtactttatctcg
actcacggagcacgtaaaggtctggcggatacagctcttcgtacagctgactcaggttac
ctgacccgccgtctggttgacgttgcacaggacgttatcgttcgcgaggacgactgtgga
acagataaagggattacagtatcccgtatccaggatggtaaggaaatcatcgaggatctc
ttcgaccgtattgaaggacgctactcgttccagacgatcaagcatccggagacaggcgag
gttattgtggctcgtaatgagctcatcgatacagatcgtgcgaatgccattgtgaatgcc
ggtgtagagaagctccagattcgttctgtactgagctgtcgtgcccgtcatggtgtttgt
aagaagtgttatggccgtaacttggctacaggcaagttcgttgagatcggtgaagcggtg
ggtatcatcgcagcccaatccatcggagagccgggaacccagctcacgatgcgtacgttc
cataccgggggcgttgcgggagacgatatcactcaaggtttgccgcgtattcaggagctc
tttgaagcccggaatccgaaaggtcaggccacaatcagtgaacttgatggtgtagtcaaa
gaaatccgtgaagctaaggatcgccgtgaaattgagatccaaggtgaagcggagactaag
gtctactccgtaacttacggttctcgtcttcgcgtaagcgaaggtcaagagatcgaagcc
ggagatgagcttaccgacggttctatcgaccctaaagaaattctgcgcatcaaaggtatc
cgcggcgtacaaaactacattttgcaagaagtgcagcgtgtataccgtaaccaaggcgta
gaaatcaacgataagcacattgaagttatgatcaagcagatgcttcgcaagatccgtatt
gtggatgctggagatactacactccttccaggctcatttgtggatatttacgaatacgag
actgcgaacaaagaggcgatcctgtcggataaagagcctgctgtagctaaaccggtctta
ctcgggattaccaaggcttcgcttgagacagactccttcctgtcggccgcttccttccag
gagacgacccgggttcttaccgatgctgctatcaaaggtaaagttgataagctgctcggc
ttgaaagagaatgttattatcggtaagctgatcccggcaggtacgggtatgaaccgttac
cgcagtgttcagtttgacgatcaagaagaaggcgacgtatctgctgagaatcttgagaca
gtatcggtagaatag
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integrated database retrieval system
