Paenibacillus sp. YPG26: LDO05_17750
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Entry
LDO05_17750 CDS
T11186
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
payg Paenibacillus sp. YPG26
Pathway
payg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDO05_17750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payg03019
]
LDO05_17750
03009 Ribosome biogenesis [BR:
payg03009
]
LDO05_17750
Enzymes [BR:
payg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDO05_17750
Messenger RNA biogenesis [BR:
payg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDO05_17750
Ribosome biogenesis [BR:
payg03009
]
Prokaryotic type
rRNA helicases
LDO05_17750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
USB33064
LinkDB
All DBs
Position
complement(3737747..3739195)
Genome browser
AA seq
482 aa
AA seq
DB search
MNIEHFAEASLSEEIVRALEGLGYDRPTDVQSQVIPLLLADRDIVVKSQTGSGKTAAYAI
PLCELVDWNENKPQALVLTPTRELAVQVKEDITNIGRFKRVKAAAVYGRHPYAVQKLELK
QKNHVVVGTPGRVLDHIERGSLPLGRLRYLVIDEADEMLNMGFIDQVEAIIQTLPAERVT
VLLSATLPEDVDNLSRKYMNEPDYIEIQGTGGITTNQIEHSLIEVTEADKPQVLQNLLIT
RNPDSCMIFCRTQELVNQVFRQLADAEYPCDRIHGGMMQEDRFEVMNAFRRGQFRYLVAT
DVAARGIDIENITHVINYDIPMDKESYVHRTGRTGRAGRTGQAITLMTPREDKYLAEIEQ
YIGFEIPRTEAPSEEEVSGAMEAFEQKIYSRTALKKEKSEEINKEIMKLYFNGGKKKKLR
AVDFVGTLARIEGVTAEDIGIITIQDNVSYVEILNGKGPHVLQVMKNTTIKGKQLKVHKA
NK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaacatagaacattttgcagaagccagcttaagtgaagagattgtccgcgccctggag
ggcctggggtacgaccgtcccaccgatgtgcagagtcaggtgatccccctgctgctcgca
gacagggatattgtggtgaagtcacagacgggaagcggcaagactgccgcatatgctatc
ccgctgtgtgagcttgtggactggaacgagaacaagccgcaggcgctcgtcctcaccccg
acccgtgagcttgctgttcaggtcaaggaagacattacgaacataggccgcttcaagcgg
gtgaaggcggcggctgtatatgggagacatccctacgcggtacagaagctggagctgaag
cagaagaatcacgttgtggtaggcactccagggcgcgtgctggatcatattgagcggggg
tctcttccgcttggacgcctaagatatcttgtgattgacgaagcggacgaaatgctgaat
atgggcttcattgatcaggtggaagcgattattcagaccctgccggcggagcgggtcacc
gtattgctgtcagctacgctgccagaggatgtcgacaatctgagccgcaaatatatgaat
gagccggactatattgaaattcaagggacgggcggcattacaacgaatcagattgagcat
tctcttatcgaggtcacggaagcggacaagccgcaggtgctccagaacctcctgattaca
aggaacccggacagctgtatgatcttctgccggactcaagagctggtgaatcaggtattc
cgccagcttgccgatgcggagtatccatgtgaccggattcatggaggcatgatgcaggag
gaccggttcgaggtcatgaatgcgttccgccgggggcaattccgctatctggttgccaca
gatgtagccgcgcgcgggatcgatattgagaacatcacgcatgtcatcaactacgatatc
cccatggacaaggagagctatgtccaccggacgggccggacaggccgggcgggacgcacc
gggcaggccattacgctgatgaccccgcgagaggacaagtatttggccgagatcgagcag
tatatcggatttgaaattccgcggacggaggctccttccgaggaggaagtgagcggggcg
atggaggcttttgaacagaagatctattcccggaccgcccttaagaaagagaagagtgaa
gagatcaacaaggagattatgaagctctacttcaatggcggcaaaaagaagaagcttaga
gccgtggacttcgtgggcactctagcccggatcgaaggtgtaactgcggaggatatcggc
atcattaccatccaggataatgtaagctatgtggagattcttaatggcaagggaccacac
gtgcttcaggtcatgaagaataccacgattaagggcaagcagctgaaggtgcataaggca
aataagtag
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