Paenarthrobacter sp. YJN-5: HMI59_05775
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Entry
HMI59_05775 CDS
T10115
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
payj Paenarthrobacter sp. YJN-5
Pathway
payj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMI59_05775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payj03019
]
HMI59_05775
03009 Ribosome biogenesis [BR:
payj03009
]
HMI59_05775
Enzymes [BR:
payj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMI59_05775
Messenger RNA biogenesis [BR:
payj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMI59_05775
Ribosome biogenesis [BR:
payj03009
]
Prokaryotic type
rRNA helicases
HMI59_05775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QOT16158
UniProt:
A0A7M2BZX7
LinkDB
All DBs
Position
1219799..1221883
Genome browser
AA seq
694 aa
AA seq
DB search
MPDTLNENLDAATESAEAAVTTADAAETAETQPAAVETPASAPAAESAPAAEDEEEGVRF
TDLGLDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRL
AELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHMDDFTVLPVYGGSAYGPQLAGL
RRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQETPDTRQ
VALFSATMPGQIRRMSKQYLNNPAEISVKSKTSTGSNIRQRYLQVMGPHKLDAMTRILEV
EEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALREGRIDILVAT
DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK
ATRQPVEQMHLPTAETVNSLRLGKFAERITETLESEDVSLFRDLIASYEEEHKVPAAEIA
AALAVMAQGGQPLLVKDLPAAPEFQKRERSKDGFNSRGPSRTLTEGNATYRIAVGRRQRV
MPGSIVGAIANEGGISSSQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLEL
DTGRKPNRDGDRGGRGGNFKGNGGFKKEFRRHDGERSSADRGGRSYSERTSGSYGDRDRG
QSGGSRFGGHGDGARKPRGGGEGGHRDFNRKGKW
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactctcaacgagaacctcgacgccgccactgaatctgccgaagcagcagtg
accaccgctgacgctgccgaaaccgccgaaacgcagccggccgccgtcgagacccccgct
tccgctcccgccgcagagtccgctcccgcagcagaagacgaggaagagggcgttcgtttc
accgacctcggccttgacggtcgcgtgctcgcagcccttcaggacgtcggctacgagaag
ccgtcgccgatccaggctgccaccattccgctgctgctcgaaggccgcgacgtcgtcgga
ctggcccagaccggtaccggcaagaccgcagcgttcgctgttcccgcactttcccgcctg
gctgagctgcacgacctcaacggcccctcacgcaagacccaggccctggtcctggccccg
acgcgtgaactcgccctccaggtggctgaagccttcacctcctacgccaagcacatggac
gacttcaccgtgctgcccgtctacggtggttcggcctacggtccccagctcgcaggcctt
cgccgcggtgcccaggttgtcgtaggcacgccgggccgcgtgatcgaccacatctccaag
ggttccctggacctttccgaactccagtacctggtgctggacgaggccgacgagatgctg
cgcatgggctttgccgatgacgtggagcagatcttccaggagaccccggacacccgccag
gtggccctgttctccgcgaccatgcccggccagatccgacgcatgtccaagcagtacctg
aacaacccggcggaaatctcggtcaagtccaagacctccacgggttccaacatccgccag
cgctacctgcaggtcatgggcccgcacaagctggacgcgatgacccgcatcctcgaggtt
gaagagttcgacggcgttatcgccttcgtgcggaccaagatggctaccgaggacctcgcc
gacaaactgaaggcccgcggtttccaggccgccgccatcaacggcgacattccccagcag
cagcgtgaacgcaccgttgacgccttgcgtgagggccgcatcgacatcctggtggctacc
gacgtcgccgcccgtggcctcgacgtggagcgcatcagccacgtggtgaactacgacatc
ccgcacgacaccgagtcctacgtccaccgcatcggccgtaccggtcgcgcaggacgcagc
ggtgacgccatcctcttcatgacgccgcgcgagaagtacctgctgcgtgccatcgagaag
gcgacccgccagcctgtcgagcagatgcacctgcccacggccgagacggtcaactcgctc
cgcttgggcaagttcgcagagcgcatcacggagaccctcgagtccgaggacgtctcgctg
ttccgcgacctgattgcctcctacgaagaagagcacaaggtcccggccgcagagatcgct
gcagcgctcgcagtcatggcacagggcggccagccgctcctggtcaaggaccttcccgct
gcaccggaattccagaagcgcgagcgttccaaggacggcttcaactcccgcggcccgtcc
cgcaccctcaccgagggtaacgcgacctaccggatcgcggttggacgccgtcagcgcgtg
atgcccggttccatcgtgggcgccattgccaacgagggcggtatctcgtcctcgcagatc
ggtggcatcgacatccgctcggaccactccctggttgaactgcctgcagacctcagcccg
gagcagctgcgcgccctgtcccgcacccgcatcggcggcgaactgatccacctcgagctg
gacacgggacgtaagccgaaccgtgacggagaccgtggcggccgtggcggcaacttcaag
ggcaacggcggcttcaagaaggagttccgccggcacgacggcgagcgttcctccgctgac
cgcggcggccgctcctacagcgagcgtacgtccggtagctacggcgaccgtgaccgcggc
cagtccggcggctcccgtttcggcggccatggtgacggcgcccgcaagccccgcggcggc
ggcgaaggcggccaccgcgacttcaaccgcaagggcaagtggtaa
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