Paenarthrobacter sp. YJN-5: HMI59_10060
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Entry
HMI59_10060 CDS
T10115
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
payj Paenarthrobacter sp. YJN-5
Pathway
payj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMI59_10060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payj03019
]
HMI59_10060
03009 Ribosome biogenesis [BR:
payj03009
]
HMI59_10060
Enzymes [BR:
payj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMI59_10060
Messenger RNA biogenesis [BR:
payj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMI59_10060
Ribosome biogenesis [BR:
payj03009
]
Prokaryotic type
rRNA processing factors
HMI59_10060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QOT16905
LinkDB
All DBs
Position
2100593..2104009
Genome browser
AA seq
1138 aa
AA seq
DB search
MDNDQVVAVNDGAEPAEAAEAPKKTTRARTARAPRKTAAKAAADSAAEPVPAEEAADAAA
AVQAPDAAAGAPAPEEPAVQAPARRSRARKKVEPAEPLPGFDGTPAPDAQVETTEPAVAT
ESAETTEPAVATEPAESAAEAADAAATAAEPAEAQAEAAPEKPVRRRRTAKAKVEAPQAD
SAEAEATAGAADAEPIAETSQEVPAEAAEEQAETDAAGSSSLFLEPVSITSMIFQAPDLS
AVVRPAEEKDAETDDETEASGEAESEDAGSRRRRRSRGRRGRRGNERDDNDAEGSSETED
DEAPAAEALEEGVTSRRRRRRRRGDQDLELTGGSDDDPPNTVTRVRAPRPITETAASNRV
ASVKGSTRLEAKKQRRRESRETGRRRQVITEAEFLARRESVDRQMIVRQRDDRIQIGVLE
DGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDAVNL
EGQPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLP
DVERNRLKRILKDRLPENAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQASSTKVLA
PELLYGEPDLTIKVVRDVFNEDFSKLIVSGDEAWDTIEAYVTYVAPDLVGRLEKWTKDQD
IFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNN
LEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLG
LVQMTRKRMGTGLLEVFGEQCEHCAGRGVVTHDEPVEHRRANVVAAEQHRSHTEAQQPSQ
RSERKRRRGKGGNQAPEVTTPVQLAAAPAAPAPAESVDPAQKAKAEATRAALATIAAAAH
AAHLHDDEVHRAEEAARAAGKAEAGQPGPAQADPARKTPAQSAPAHGEAAQAPAQGGQTQ
GSTPAETAAREGRPAPVLRFGGEEVALPFVEHHDEPAKKPAMSLDLLAEAFSHLGGTPEV
VPGSEVAGSGVAGSGKDAPGNVESADAPVSADVLAATSAGTEPVESRSGARGRRGRRNRS
ASRAQGAANETNVEHHDVRAATGGGTSHEAKAPVEPAKKPTAASEPIILGVGVPASEL
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaccaggttgtagccgtaaatgatggggcggaacccgcggaagcagcggag
gcgcccaagaaaaccacccgcgccaggaccgcccgcgcgccccgcaagactgccgccaag
gcagctgccgacagtgcggcagagccggtgcccgccgaagaagctgccgatgccgctgcg
gctgtccaggcccccgatgccgctgccggcgcaccggctcctgaagaaccagctgtgcag
gctccggcacgtcgaagccgtgcccgcaagaaggttgagcctgctgagccccttcccggc
ttcgatgggacccctgcgccggatgcgcaggtagagaccacagaaccggcagtggccaca
gaatcggcagaaaccacagaaccggcagtggcaacagaaccggcagagtctgccgctgag
gccgcagacgcagcagcaaccgccgctgagcccgcagaagcgcaagccgaggctgcaccg
gaaaagccggtccgccgtcgtcgtactgcaaaagcaaaggttgaagctccgcaggccgat
agcgccgaagccgaagccacagccggtgccgcggatgcagagcccatcgcagaaaccagt
caggaagttccggccgaagcagcggaggagcaggctgaaacggacgctgccggttcgtcc
tccttgttccttgagccggtctccatcacctccatgatcttccaggcgcccgacctcagc
gctgttgtccgcccggccgaagaaaaagacgccgagaccgacgatgagactgaggccagt
ggtgaagctgagtcggaggatgccggcagccgtcgccgtcgccgcagccggggacgccgc
ggacgccgcggcaacgaacgcgatgacaacgatgccgaaggcagcagcgaaaccgaagac
gacgaagctcccgctgcggaggcgttggaagagggcgtcacttcgcgtcgtcgccgtcgg
cggcgtcggggggaccaggaccttgaactgaccggcggatcggatgacgatccgcccaac
acggtcacccgggtacgggcgccccgccccatcaccgagaccgctgcctccaaccgggtg
gcgagcgtcaagggttcaaccaggctcgaagccaagaagcagcgacgccgcgaatcgcgc
gaaaccggtcgccgccgccaggtcatcaccgaggccgagttcctggcgcgtcgtgagtcc
gtcgaccgccagatgatcgtccgccagcgcgatgacagaatccagatcggcgtcctggaa
gacggcgtgctggctgaacactttgtttccaagacccagcaggactccctcatcggaaac
gtctacctgggcaaagtacagaacgtcctgccgtccatggaggcagcgttcgtcgacatt
ggacgcggccgcaatgcggtgctctatgccggcgaggtgaactgggacgcggtgaacctt
gagggccaaccgcgccggatcgagaacgcgctcaagtccggagactcggtcctggtgcag
gtcaccaaggaccccgtgggtcacaagggtgcgcgcctgaccagccagatctccctgccg
ggccgctacctcgtctatgttccgggcggttccatgaccggaatctcccggaaactgccc
gatgtggaacggaaccgcctcaagcggatcctcaaggaccgtttgccggagaatgccggc
gtgattgtccgcacggccgccgaaggcgcgtcggaagaggaactgacccacgacatcaac
cgcctccgggcgcagtgggaaggcatcgagagccaggcatcctcaaccaaggtccttgcc
ccggaactgctgtacggcgaaccggacctcaccatcaaggtggttcgggacgtcttcaac
gaagacttctccaagctgattgtttccggcgacgaagcctgggacaccattgaggcctac
gttacgtacgttgcacctgacctggtgggtcgcttggaaaagtggaccaaggaccaggac
atctttgctgcctggcgcattgacgaacaaatccacaaggctctggaacgcaaggtcttc
ctgccgtccggcggctctttggtgatcgaccgtaccgaggccatgactgtggtggacgtc
aacaccggcaagttcaccggcagcggcggcaacttggaagagaccgtcaccaagaacaac
ctggaagcggccgaagaggtagtccgtcagctccgcctccgtgacatcggcggcatcatc
gtcatcgacttcatcgatatggtcctggagtccaacagggacttggtgctgcgccggctg
gtggagtgccttggccgcgaccgcaccaagcaccaggtggcggaggtgacgtccctgggc
ctcgtccagatgacgcgcaagcgcatgggcacaggcttgctggaggtcttcggtgagcaa
tgcgagcactgtgccggccgcggcgtggtgacgcacgacgagcccgtggagcaccgccgc
gccaacgtggtggctgccgagcagcaccggtcccacaccgaagcccagcagccgtcccag
cgcagtgagcgtaagcgtcgccgcggcaagggtggcaaccaggcaccggaagttacgacg
ccggtccagctggccgctgccccggcggcacccgctccggctgagtccgtggaccccgcc
cagaaagccaaggcagaggctacccgggccgcattggcgacgatagccgctgctgcgcac
gctgcacacctgcatgatgacgaggtgcaccgcgccgaggaagcagcccgcgccgccggc
aaggcggaagcaggccagccgggtcccgcccaggcggaccctgcccggaagactcctgcg
cagtcggctcctgcccacggggaggccgcccaggcccctgcgcagggcgggcagactcag
ggctccaccccggcagaaactgcggccagggagggccgtccggctccggtactgcgcttc
ggcggagaggaagtggctctgcccttcgtggagcatcacgacgaacctgccaagaagcct
gccatgagcctggatctgctggctgaggccttctcgcacttgggtggcacacctgaggtt
gtccccgggtctgaggttgccgggtctggggttgccgggtccgggaaggacgcgcccggg
aacgttgaatctgctgacgcacccgtgagcgccgacgtcttggcagccacgtccgctggt
actgaacccgtggagtcccggtccggcgcccgtggccggcgcggcaggcggaaccgcagt
gccagcagggcccagggcgccgccaacgagaccaacgttgagcaccacgacgttcgggcc
gccacaggtggcgggacctcgcacgaagcgaaggcgccggttgagccggcaaagaagcca
actgcagcatcggagccgatcatccttggggtgggtgttccggcttcggagctgtaa
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