Paenarthrobacter sp. YJN-5: HMI59_17080
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Entry
HMI59_17080 CDS
T10115
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
payj Paenarthrobacter sp. YJN-5
Pathway
payj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMI59_17080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payj03019
]
HMI59_17080
03400 DNA repair and recombination proteins [BR:
payj03400
]
HMI59_17080
Enzymes [BR:
payj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMI59_17080
Messenger RNA biogenesis [BR:
payj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMI59_17080
DNA repair and recombination proteins [BR:
payj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMI59_17080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_Crp_2
P-loop_SecA
DUF3553
MarR_2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QOT18148
LinkDB
All DBs
Position
complement(3671781..3673475)
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AA seq
564 aa
AA seq
DB search
MSDESALAALAAGSFSLDALRDGQLAAMSALAEGRDVLAVMPTGYGKSATYQVAALYLHQ
QQQKLHGRTGGPAVVVSPLIALQEDQLEGLNRHLGEGAAVAVNSAHSDADVDAAWDAVES
GKAVYLFLAPEQLAKQETVERIARLDLTLLVVDEAHCVSSWGHDFRPDYLNLGNVRESLG
NPPVAALTATASPPVRDEIVERLGMQDPLILVRGFDRPNISLEVVRHHEDKAKRKAVLSQ
VASLTTSGQKGLVYAATRKDTEKYAAKLVAQGIRAEAYHAGRSASERELIHEQFLADDLD
VVVATTAFGMGIDKPNVRFVVHADIPESLDAYYQEIGRGGRDGDKARAVLHYRSEDLGLR
KFFGTHAPDQESLLAVLKVLKNAGAPATKKVLAELTGFPPRRVTALVNQLEEADAVKVGK
RGVRLASKAKLRSLVAHAVELAEARQRVDHSRLTMMRAYAETDSCRRQFLLGYFGEELAK
ACGNCDVCTEAANHPDVRPTGKETPDAGASPDPFPLQSAVIHKEWGPGLVMRHEDDVITV
LFEHEGYKTLSRSTVMEHELLRPA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaatcagccctggccgcgctcgcggccggatccttctcgctggatgcactc
agggatgggcaacttgccgccatgagcgcgctcgccgaaggacgcgacgtccttgccgtg
atgcccaccggatatggcaagtccgccacctaccaggtcgccgccttatacctgcaccaa
cagcaacagaaactgcacggccgaaccgggggacccgccgtcgtggtttctccgttgatc
gccttgcaggaagaccagttggagggcctcaacaggcacctgggcgagggcgccgccgtc
gcggtcaactcggcccacagcgacgcggacgtggacgccgcatgggacgcggtggagtcc
gggaaggcggtctatcttttcctggctcccgagcagttggccaagcaagagacggtggag
cggatcgcgcggttggacctcaccctgctggtagtggacgaggcccattgcgtttcatcc
tggggacacgacttccggcccgactacctcaacctcggcaacgtccgtgaaagcctgggg
aacccgcccgtcgcggccctgacagcaacggcttccccgcccgtgcgggacgaaattgtt
gagcgcctgggcatgcaggatccactgatcctggtccggggcttcgaccgtcccaacatc
agcctggaagtagtccgccaccacgaggacaaggccaaacggaaggccgtgctgtcccag
gttgcgtcgttgacgacgtcgggacagaagggtttggtgtacgcggccacccgcaaggac
acggagaagtacgcggccaagctggtggcgcagggaatccgtgccgaggcctaccacgca
ggccgttccgcctccgagcgcgaactcatccacgagcagttcctggccgatgaccttgat
gtagtggttgccacgacggcgtttggcatgggcatcgacaagcccaacgtcaggttcgtg
gtgcacgccgatatccccgagtccctcgatgcctactaccaggagattggccggggcggc
agggacggggacaaggcgagggcagtgctgcactaccggtccgaggacctcggcctgcgc
aagttcttcggcacccatgctccggaccaggagtccctcctcgccgtgctgaaggtcctg
aagaacgcgggggcgccggcaaccaagaaggtcctggccgagctgaccgggttcccgccg
aggcgcgttactgccttggtgaaccagctggaggaagccgacgcggtgaaggtgggcaag
cgcggcgtccggcttgcctccaaagcgaagctgcggtccctggtggcccacgccgtcgag
ctggccgaagcacgccagcgcgtggaccattcccgcctcaccatgatgcgcgcgtacgca
gagaccgacagctgccgccggcagttcctgctgggctacttcggggaagaactggcaaag
gcctgcggaaactgcgacgtctgtacagaagccgccaaccatcccgacgtgcggcccacc
ggcaaggaaacgcccgacgccggcgcctcgcctgatccgttcccgttgcagtccgcggtg
atccacaaggaatgggggccaggacttgtcatgcggcacgaagacgacgtcatcaccgtg
ctgttcgagcacgaaggatacaaaaccctgtcccgctcgaccgtcatggagcacgaactc
ctcaggcctgcctag
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