Paenarthrobacter sp. YJN-D: HMI60_04275
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Entry
HMI60_04275 CDS
T10599
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMI60_04275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
payn03019
]
HMI60_04275
03009 Ribosome biogenesis [BR:
payn03009
]
HMI60_04275
Enzymes [BR:
payn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMI60_04275
Messenger RNA biogenesis [BR:
payn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMI60_04275
Ribosome biogenesis [BR:
payn03009
]
Prokaryotic type
rRNA processing factors
HMI60_04275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QOT20813
LinkDB
All DBs
Position
complement(912317..915463)
Genome browser
AA seq
1048 aa
AA seq
DB search
MDNDQVVAVNDEAAPAETAEAPKKTTRTRRKAAPKAVAEAEATEAPATGTPAVAETPEAD
AKPVRRTRSRKKVEPTEPLPGLGDETAAGQEPAAETQPEAVPEAAPEKPVRRRRAAKPKV
EAEETPAAAEVVEETTTPEAGTQPEEPAAEEEAPAEEAAPAAATSLFMEPVSITSMIFQA
PDLTTVPRVAAVEETDDEPEDDAEAAADGELDEGGSRRRRRSRGRRGRRGTERDENDTED
GNDSGDEETPAAEALEEGVTSRRRRRRRRGDQDLELTGGSDDDPPNTVTRVRAPRPITET
APSNRVASVKGSTRLEAKKQRRRESRETGRRRQVITEAEFLARRESVDRQMIVRQRDDRI
QIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVN
WDAVNLEGQPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTG
ISRKLPDVERNRLKRILKDRLPENAGVIVRTAAEGASEEELTHDINRLRAQWEGIEGQAS
STKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGDDAWDTIEAYVTYVAPDLVGRLEK
WTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEE
TVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRDRTKHQVA
EVTSLGLVQMTRKRMGTGLLEVFGEQCEHCAGRGVVTHDEPVEHRRANTVAAEQHRPHTE
AQQSTARTERKRRRGKGGAQGTVEAPAQVHSTPSAPVAAPAAHPEAQDPARQAKAEATRA
ALATIAAAAHAAHLHDDELHKAEEQTRAAGEHGPDAGSVSAAPTAREAAAHDAAVREGRA
TPVLRFGGEEVALPFVEHHDEPQAAQPAMSLDRLAEAFSHLGAAPSPEDQKAKEAVEAPK
AADTPTTEAPAPAGDEAPSASRGRRSRRNRSASRAQGAANETTVEHHDVTATAAKGSAHE
SKAPAEPVRRAAPDEPIILGVGVPASEL
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaccaggttgtagccgttaatgatgaggcagctcccgcggaaactgcggaa
gcgcccaagaaaaccacccggacccggcgcaaggctgcgcccaaggcagttgctgaggca
gaggcaactgaggcccctgccactgggacgcccgcagttgcggaaactcccgaggctgac
gccaagcccgtacgccgcacccggtcccgcaagaaggttgagccaaccgagcccttgccc
ggcctcggcgatgaaaccgccgcaggccaggagcctgccgccgaaacccagcccgaagcc
gtccctgaagctgcccccgaaaagccggtccgccgtcgtcgtgctgccaagcccaaggtg
gaggcagaagagacgcccgcagctgctgaagttgttgaagaaaccacgacgccggaggcc
ggcacccagccggaagaacctgccgctgaggaagaggctccggccgaggaagctgctcct
gccgctgccacctcgctgttcatggagccggtttccatcacgtcgatgatcttccaggcc
cctgacctcaccactgtcccgcgcgttgcggccgtggaagagacggacgacgagccggaa
gacgacgctgaagcagccgcagacggtgagctggacgagggtggcagtcgtcgccgtcgc
cggagccgtggccgccgcgggcgccgtggcactgaacgcgacgagaacgacaccgaagac
ggcaatgactccggcgacgaagaaactcccgcagctgaagccctcgaggaaggcgtcacg
tcgcgtcgccgtcgtcgtcggcgtcgtggagaccaggaccttgaactgacgggcggctcg
gatgacgacccgcccaacacggtaacccgcgttcgcgccccccggcccatcacggaaacg
gctccttccaaccgggtcgcaagcgtcaagggctccacccggctcgaggccaagaagcag
cgtcgccgcgagtcccgcgagaccggacgtcgccgccaggtgattaccgaagccgagttc
ctggcacgccgcgaatccgtggaccggcaaatgatcgtccgccagcgcgacgacagaatc
cagatcgcagtccttgaagatggcgtcctggccgagcacttcgtgtccaagacccagcag
gactccctgatcggcaacgtctatctcggcaaggtccagaacgtactgccatccatggaa
gctgcattcgttgatatcggacgcggccgcaacgcggtgctgtacgccggtgaagtcaac
tgggatgcagtgaacctggagggccagccgcgccggatcgagaatgcgctgaagtccggc
gactccgtcctggtccaggtgaccaaggatccggtgggtcacaagggtgcccgcctcaca
agccagatctcacttccgggccgctaccttgtgtacgtgccgggtggatccatgaccggc
atctcccgcaagctgcccgacgtcgaacgcaaccgcctcaagcggatcctgaaggaccgc
ctgccggaaaacgccggagtcatcgtccgtacggccgctgaaggtgcctcggaagaagaa
ctgacccacgacatcaaccgtctgcgcgcgcagtgggaaggtatcgaagggcaagcttcc
tccacgaaggtgctggcaccggaactgctttacggcgaaccggacctcaccatcaaggtt
gtccgtgacgtcttcaacgaggacttctccaagctgatcgtctccggtgacgacgcctgg
gacaccatcgaggcctatgtaacctatgttgcccccgacctcgtgggccgccttgaaaaa
tggaccaaggatcaagacatcttcgctgcctggcgcatcgatgagcagatccacaaggcc
ctggaacgcaaggtcttcctgccatccggtggctcgctggtcattgaccgcaccgaagcc
atgacggtggtggacgtcaacacaggtaagttcaccggcagtggtggaaacctggaagag
acagttaccaagaacaaccttgaagctgccgaggaagtcgttcgccagcttcgcctgcgt
gacatcggcggcatcatcgtcatcgacttcatcgacatggtcctggaatccaaccgcgac
ctcgttctccgccgcatggtggagtgcctgggccgtgaccgtaccaagcaccaggttgct
gaagtaacgtcactgggccttgtccagatgacccgcaagcgcatgggcaccggtctcctt
gaagtcttcggtgagcagtgcgagcactgcgcaggccgcggtgtcgtgacgcatgacgag
cccgtggagcaccgccgcgccaacaccgtggcagccgagcagcaccgtccgcacaccgag
gcacagcagtccacggcccgcaccgagcgcaagcgtcgccgcggcaagggcggcgcccag
ggaacggtcgaagcgccggcccaggtccattcgacgccgtccgcccctgttgcggcaccg
gcagcacacccggaagcccaggaccctgcccgtcaggcaaaagccgaagcaacccgggct
gcactggcgacgattgcagcggccgcgcatgccgcccaccttcacgatgacgagctccac
aaggcagaggagcaaacccgggcggccggggagcatggtcccgacgccggttcggtctcc
gctgccccgacggcccgggaagccgcggcgcacgacgccgctgtccgcgaaggccgggct
actccagtgctgcgttttggcggcgaagaggttgccttgcctttcgttgaacaccacgat
gagccgcaggcagcccagccggccatgagcctggatcgtctggccgaagctttctcccac
cttggcgcggcaccgtcgcctgaggatcagaaagccaaggaagctgtcgaagccccgaag
gctgcggacaccccgacgactgaagctccggctccggccggagacgaagccccctcagca
tcgcggggtcgtcgtagccgccggaaccgcagtgcaagcagggcccaaggcgcggccaac
gagaccactgttgagcaccacgacgtgaccgctacggccgcgaagggatcggcgcacgag
tccaaggcgcctgcggagccggtcaggagagcggccccggacgaacccatcatcctgggc
gtcggcgtaccggcctccgaactctaa
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