Paenarthrobacter sp. YJN-D: HMI60_04320
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Entry
HMI60_04320 CDS
T10599
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMI60_04320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_04320
Enzymes [BR:
payn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HMI60_04320
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HMI60_04320
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HMI60_04320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Cys_rich_KTR
Zn_ribbon_RRN7
Zn_ribbon_8
DUF7577
Ribosomal_L32p
Motif
Other DBs
NCBI-ProteinID:
QOT20822
LinkDB
All DBs
Position
927440..928315
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AA seq
291 aa
AA seq
DB search
MPELPEVHGLCMYLDTQLHGATLTEVRINSFSALKTADPPYTALEGRTVQGVQRIGKFVC
VDLDGLFFVFHLAKAGWVRYTEHPSSAGLRMGKSNISARLLFHRASDDAHIGMDLTEAGT
KKSLAIYVVRDPQEVPGIATLGPEPLSPDFDEAAFAAILKSSPQQIKGLLRSQSVIAGIG
NAYSDEILHAARISPFAIAKSLDQETVARLYQSLQEVLVGAVNAAAGKPSSELKDTKRSN
FRVHARTGLPCPVCGETVREVSFADTSLQYCPHCQTNGKILADRRTSRFLK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaagtgcacggcctgtgcatgtacctggacacccaactccacgga
gccacgctgactgaggtccgcatcaactccttctcggcactcaagaccgccgacccgccc
tacaccgccctcgaaggcaggacagtccagggggtgcaacggatcggaaagttcgtttgc
gttgacctggacggactgtttttcgtgttccacctggccaaggcgggctgggtccgctac
acggagcacccgtcttcggcagggttgcggatgggcaagagcaacatttcggcaaggttg
ctgttccaccgcgccagcgacgacgcccacatcggaatggacctcaccgaagccgggacg
aagaaaagcctggccatctatgtggtcagggacccacaggaagttccaggcatcgcaaca
ctcggtcccgagccgctgagcccggacttcgatgaggctgcattcgccgcgattctgaag
tccagtccacagcagatcaaaggtctgttgcgcagccaaagtgtcatagccggaatcggc
aacgcctacagtgacgagatcctccacgccgccaggatctcccctttcgccatagcgaag
tcgctggaccaagagaccgtggcgcggctgtatcagtcactgcaggaggtcctggtcggc
gccgtcaacgcggcagccgggaagccatccagcgaactcaaggacaccaagcgcagcaac
ttccgcgtacacgcccggacgggcctgccgtgtcctgtgtgcggagaaacagtaagggag
gtgtccttcgcggacacctccctccaatactgtccccactgccagaccaacggtaagatc
ctggccgaccgccggacctcacgattcctcaagtag
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