Paenarthrobacter sp. YJN-D: HMI60_05575
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Entry
HMI60_05575 CDS
T10599
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HMI60_05575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_05575
Enzymes [BR:
payn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HMI60_05575
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HMI60_05575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
QOT21047
LinkDB
All DBs
Position
complement(1179103..1181673)
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AA seq
856 aa
AA seq
DB search
MAGKQQERVTVEGHELTLTNLGKIIYPETGTTKAEVLEYYATVAPFLIPAAANRPVTRKR
WVNGVGTAEHPGEVFFQKNLEDSAPRWIPRAAIQHSDHTNVYPMVNNLATLTWMAQIASL
EIHVPQWQVDAAGKPLRPDRFVLDLDPGPGAGLPECVEVATLARSILQDMGMEPVPVTSG
SKGIHLYAGLDGTLKSEQVSAFAHELARALEADHPGLVVSDMKKSLRKGKVLVDWSQNSG
NKTTIVPYSLRGRAQPTVAAPRTWQELASPSLDQLDYTEVMERVSSGKDHFAPISDRHLP
PHGEDDNDDAGASAVSGGGRESVVTVGNRLAKYVGMRDPGKTPEPFPSSSAASAVSQGPA
SSAQPKPGDPAPAGGIFVIQEHHARRYHLDLRLEHNGVLASWALPRGVPETSERNNLAVH
TEDHPMEYATFAGVIPKGEYGAGTMTIWDRGEFTCEKWRDGKEVIATLTGEPGGGLGGTK
RLALINTGDRWLIHLMKEQPGARRTAATAPAAKRQAPPEPESAPEPKQEPQPLRDYAPML
ATSGTTADLRGDNWLYELKWDGIRAIITGSEGRIRLMSRNGNDLTAAYPELTDRACWPEG
DFVADGEIVALGKGARPDFGRLQLRMNLVKTADIERARVSVPVQLMLFDLLYDAGADLSG
LPFVERRERLDAFAGRMPGGCPVHVSAVLDHDVDDLMTSAADLGLEGVMAKKADSRYVVG
RRSASWIKLKLEQSQEIVVGGWRPGAGARSGTFGALLLGIPDGDTLHYVGRVGTGFKDWQ
LRDIMEQLEPLMVDDSPFKDIPREDAAGAHWVKPVLVAEVTFGNWTGPGRLRHPVWRGWR
PDKSPSDVSQPNQGDR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggcaagcagcaggagcgggtgaccgtggaaggccacgaactcaccctcaccaac
ctgggcaaaatcatttacccggaaaccgggaccaccaaggctgaggtccttgagtactac
gccaccgtggcccccttcctcatccccgccgcggccaaccggcccgtcacgcgcaaacgc
tgggtcaacggcgtgggcacggccgaacatcccggtgaggtgttcttccagaagaacctg
gaggactcagcgccacgctggatcccccgggccgccatccagcattcggaccacaccaac
gtctatccgatggtgaacaacctggccacgctcacgtggatggcccagatcgcgtccctg
gaaatccacgttccgcaatggcaggtggatgctgcgggcaagcccctcaggccggaccgc
ttcgtcctggatctggaccccggtcccggcgccggactgcccgagtgcgtggaagtggcc
accctggcccgttccatcctgcaggacatgggcatggaacctgtccccgtcaccagcgga
agcaaaggcatccatctctatgcagggctcgacggcacgttgaaatccgagcaagtgtcc
gcgttcgcccatgagctcgcgcgcgccctggaagccgatcaccctggcctcgtggtcagc
gatatgaagaagtccctgcgcaagggcaaggtcctggtggactggagccagaacagcggg
aacaagacaacgatcgtgccgtactccttgcgtggcagggcccaaccaacggtggcggct
ccccggacgtggcaggagctggcctctccttcccttgaccagttggactacacggaagtg
atggaacgagtcagttcgggcaaggaccacttcgcgcccatctcggaccggcacctgccg
ccccatggcgaggacgacaatgacgacgccggcgcgtccgctgtgtcgggcggtggccgc
gagagcgtggtgacggtcgggaatcgtctcgccaaatacgtcgggatgcgcgatccgggc
aaaaccccggagccgtttccgtcgtcgtcggctgcttctgcggtgtcgcagggccccgct
tcctccgcgcagcccaagccgggcgatcctgcgccggccggcggaatcttcgtgatccag
gagcaccacgcccgccgctaccatcttgacctgcgcctggagcacaacggcgtcctggct
tcctgggcgctgccccgcggtgtcccggaaacgtccgagcggaacaacctggccgtgcac
accgaggaccaccccatggagtacgcaacgttcgccggggtcattccgaagggcgagtac
ggggcgggaaccatgaccatttgggaccgcggcgagttcacgtgcgagaagtggcgcgat
ggcaaggaagtcatcgcgacgctcacgggcgagccgggtggtgggctgggcggcaccaaa
cgcctggccctgatcaatacgggcgaccgctggctgatccacctgatgaaggaacagccg
ggcgccaggcggaccgccgcaaccgcgcccgcagcgaagcgccaggccccgccggaaccg
gagtcagcgcccgagcccaagcaggagccacagcccttgcgcgactacgctccgatgctt
gccacgtccgggaccaccgctgatcttcgcggcgacaactggctgtatgagctcaagtgg
gacggtatccgggccatcatcaccggatccgagggccggatccgcctgatgagccgcaac
gggaacgacctcactgcggcctaccctgaactgacggaccgcgcgtgctggcccgaaggt
gacttcgtggcggacggcgaaatcgtggcactcggcaagggggccaggccggatttcggc
cggctgcagctccgtatgaacctggtgaagacggccgacatcgagcgtgcccgggtctcg
gtgccggtacagctcatgctctttgatttgctgtacgacgccggcgcggacttgagcggg
ctgcctttcgtcgagcgtcgcgaaaggctggacgcgttcgccggacgcatgcccggcggc
tgcccggttcacgtttccgccgtgttggatcacgacgtcgacgacctcatgaccagcgcc
gcggatctgggcctggagggcgtgatggccaagaaagccgacagccgctatgtggtcggc
cgccgcagtgcttcatggatcaagctcaagctggagcagagccaggaaatagtggtgggc
ggctggcggcccggcgcgggcgcccgaagcggaactttcggggcgttgctgctgggcatt
cccgacggcgacaccttgcactacgtgggaagggtgggcacggggttcaaggactggcag
ctgcgggacatcatggagcagttggagcccttgatggtggacgactccccgttcaaagac
attccgagggaggacgcagccggagcgcactgggtgaagccggtgctggtggccgaggtg
actttcggcaactggacaggccctggcaggcttcgtcatccggtgtggcggggctggcgt
ccggacaagtccccctcagacgtcagccagcccaaccagggggatcgataa
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